| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1906724 = | 57 (1.080) | 8 (0.190) | 7/194 | NT | 18.4% | intergenic (+22/+106) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | 1906818 = | 26 (0.630) | intergenic (+116/+12) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1906898‑1906724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCG > NC_002947/1906818‑1906965 GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAG < 1:849954/150‑1 GCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGG > 2:986565/1‑150 ATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGG < 1:169864/150‑1 TGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGG < 1:117133/150‑1 TGGGGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTT < 2:168050/150‑1 TGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCC < 2:1135053/150‑1 CAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCG > 1:95805/1‑150 CCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAG > 2:308932/1‑150 CTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGA < 2:972207/150‑1 CTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCAGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGA < 2:827482/150‑1 GTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGC > 2:341924/1‑150 TTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAA > 2:101640/1‑108 TTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAA < 1:101640/108‑1 GGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGG < 1:86554/92‑1 GGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGG > 2:86554/1‑92 GCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACC > 2:1344467/1‑150 CCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCA > 2:335283/1‑150 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGC > 1:396166/1‑109 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGC < 2:396166/109‑1 CGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATC > 1:888/1‑150 CGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATC > 2:1131898/1‑150 CGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGT < 2:888/150‑1 TGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACT > 1:1295277/1‑150 CGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCA < 2:117133/150‑1 GGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAG < 1:1070335/150‑1 GCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGA < 1:346550/150‑1 TTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACT > 1:425235/1‑150 CCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACA > 1:203081/1‑150 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT < 1:1131898/150‑1 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCACATGCGCGGGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT > 2:971094/1‑150 GAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 1:214836/150‑1 AGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGC < 2:1295277/150‑1 GGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCT < 1:972207/150‑1 CCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCG < 1:583658/150‑1 GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1906898‑1906724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCG > NC_002947/1906818‑1906965 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |