| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1947843 | 50 (0.950) | 3 (0.070) | 3/194 | NT | 6.9% | intergenic (‑61/+109) | PP_1748/PP_1749 | hypothetical protein/acetyltransferase |
| ? | NC_002947 | = 1947910 | 42 (1.020) | intergenic (‑128/+42) | PP_1748/PP_1749 | hypothetical protein/acetyltransferase | |||||
GGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1947702‑1947843‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgggagcggccttgtgtcgcgaaTGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGACATGTCCGAACGACTCCC < NC_002947/1947910‑1947766 GGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCT < 1:1411337/131‑1GGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCT > 2:1411337/1‑131 GGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCG > 2:85917/1‑150 GGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGC < 1:826638/150‑1 GTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACA < 1:85917/150‑1 CGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCC < 1:1294701/38‑1 CGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCC > 2:1294701/1‑38 TGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGA < 1:1062664/150‑1 TGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGA < 1:274326/150‑1 TGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGA < 1:922530/150‑1 GAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAA > 1:44822/1‑129 GAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAA < 2:44822/129‑1 CCTTGTGTCGCGAATGGGGTGCGAAGCGCTCCCAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACT < 1:957184/111‑1 CCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACT > 2:957184/1‑111 CTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGACATGTCCGAA > 2:816399/1‑150 GTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGACATGTCCGAACGACT > 2:515600/1‑150 GTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCCCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGACATGTCCGAACGACT < 1:761951/150‑1 TCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTC < 1:766928/77‑1 TCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTC > 2:766928/1‑77 GCGAATGGGGTGCGAAGCGCCCCTAGAGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGACATGTCCGAACGACTCCC < 1:363471/150‑1 GAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTG > 2:1168555/1‑128 GAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGATTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTG < 1:1168555/128‑1 GGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1947702‑1947843‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgggagcggccttgtgtcgcgaaTGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAGACTGCAAAATTTTAACCCGACCGGAGGCCTGGACATGTCCGAACGACTCCC < NC_002947/1947910‑1947766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |