| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2071951 = | 73 (1.390) | 6 (0.120) | 5/232 | NT | 8.5% | coding (1500/2133 nt) | PP_1847 | TonB‑dependent ferric siderophore receptor |
| ? | NC_002947 | 2071986 = | 60 (1.210) | coding (1465/2133 nt) | PP_1847 | TonB‑dependent ferric siderophore receptor | |||||
AAAGACCTGGGACGAGAACGGCGTAGCCGGGCGCCATACTCGCCAATACGAGCTGCTGCCCAACGCTGCGCTTATCTACAAACCGCAGCCGAACACCACGGTATACGCCAGCTACGCCAA‑GGGCC‑TGTCTGCCGG‑AGGCACGGCCCCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2072101‑2071951‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttggCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAGGTCTTTTCATCCAGGCGCACTTCACGGGCGCCCAGCACG > NC_002947/2071986‑2072134 AAAGACCTGGGACGAGAACGGCGTAGCCGGGCGCCATACTCGCCAATACGAGCTGCTGCCCAACGCTGCGCTTATCTACAAACCGCAGCCGAACACCACGGTATACGCCAGCTACGCCAA‑GGGCC‑TGTCTGCCGG‑AGGCACGGCCCCTTG > 1:1354837/1‑150 ACGGCGTAGCCGGGCGCCATACTCGCCAATACGAGCTGCTGCCCAACGCTGCGCTTATCTACAAACCGCAGCCGAACACCACGGTATACGCCAGCTACGCCAAGGGGCCGTGCCT‑CCGGCAGACA‑GG‑CCCTTGGCGTAGCTGGCGTATAC < 1:1368714/150‑1 GCCAA‑GGGCC‑TGTCTGCCGG‑AGGCACGGCCCCTTGGCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAGGTCT > 1:180454/1‑150 GCCAA‑GGGCC‑TGTCTGCCGG‑AGGCACGGCCCCTTGGCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTC > 1:224962/1‑137 GCCAA‑GGGCC‑TGTCTGCCGG‑AGGCACGGCCCCTTGGCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTC < 2:224962/137‑1 CCAA‑GGGCC‑TGTCTGCCGG‑AGGCACGGCCCCTTGGCGTAGCTGGTGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGAGCCCGGCTACGCCGTTCTCGTCCCAGGTCTT > 2:221981/1‑150 TGTCTGCCGG‑AGGCACGGCCCCTTGGCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAGGTCTTTTCATCCAG < 2:180454/150‑1 CCTTGGCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAGGTCTTTTCATCCAGGCGCACTTCACGGGCGCCCA > 2:1253633/1‑150 CTTGGCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAGGTCTTT < 1:1303435/121‑1 CTTGGCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAGGTCTTT > 2:1303435/1‑121 GCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAGGTCTTTTCATCCAGGCGCACTTCACGGGCGCCCAGCACG > 2:603524/1‑150 GCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAG < 1:1320965/111‑1 GCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAG > 2:1320965/1‑111 AAAGACCTGGGACGAGAACGGCGTAGCCGGGCGCCATACTCGCCAATACGAGCTGCTGCCCAACGCTGCGCTTATCTACAAACCGCAGCCGAACACCACGGTATACGCCAGCTACGCCAA‑GGGCC‑TGTCTGCCGG‑AGGCACGGCCCCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2072101‑2071951‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttggCGTAGCTGGCGTATACCGTGGTGTTCGGCTGCGGTTTGTAGATAAGCGCAGCGTTGGGCAGCAGCTCGTATTGGCGAGTATGGCGCCCGGCTACGCCGTTCTCGTCCCAGGTCTTTTCATCCAGGCGCACTTCACGGGCGCCCAGCACG > NC_002947/2071986‑2072134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |