| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2518405 = | 76 (1.450) | 7 (0.140) | 4/238 | NT | 8.1% | coding (782/1023 nt) | PP_2211 | AraC family transcriptional regulator |
| ? | NC_002947 | 2518427 = | 85 (1.670) | coding (804/1023 nt) | PP_2211 | AraC family transcriptional regulator | |||||
TGCTGTCGGCGAACCCCAAACGCTCGGCAAGCTCGCCCATGGCCACGTCTTCCTGGCTGAGCCAGGCGATCGCCAGCTCCCGTCGTACGCTGTCCTTCAAGCCCTGGTAGTTCTGCCCCTCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2518557‑2518405‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgCCTGGCAGAAGAGGGGCAGAACTACCAGGGCTTGAAGGACAGCGTACGACGGGAGCTGGCGATCGCCTGGCTCAGCCAGGAAGACGTGGCCATGGGCGAGCTTGCCGAGCGTTTGGGGTTC > NC_002947/2518427‑2518547 TGCTGTCGGCGAACCCCAAACGCTCGGCAAGCTCGCCCATGGCCACGTCTTCCTGGCTGAGCCAGGCGATCGCCAGCTCCCGTCGTACGCTGTCCTTCAAGCCCTGGTAGTTCTGCCCCTCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATG < 1:116638/150‑1TGCTGTCGGCGAACCCCAAACGCTCGGCAAGCTCGCCCATGGCCACGTCTTCCTGGCTGAGCCAGGCGATCGCCAGCTCCCGGCGTACGCTGTCCTTCAAGCCCTGGTAGTTCTGCCCCTCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATG > 1:957195/1‑150 TCGCCCATGGCCACGTCTTCCTGGCTGAGCCAGGCGATCGCCAGCTCCCGTCGTACGCTGTCCTTCAAGCCCTGGTAGTTCTGCCCCTCTTCTGCCAGGCGCCATCGACCCTGCGTC‑‑‑GGCGCCTGGCAGAAGAGGGGCAGAACTACCAGG < 2:600517/150‑1 TGGCTGAGCCAGGCGATCGCCAGCTCCCGTCATACGCTGTCCTTCAAGCCCTGGTAGTTCTGCCCCTCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATGG < 1:731734/98‑1 TGGCTGAGCCAGGCGATCGCCAGCTCCCGTCATACGCTGTCCTTCAAGCCCTGGTAGTTCTGCCCCTCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATGG > 2:731734/1‑98 TGGTAGTTCTGCCCCTCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATGGCGCCTGGCAGAAGAGGGGCGGAACTACCAGGGCTTGAAGGACAGC > 1:1330432/1‑92 TGGTAGTTCTGCCCCTCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATGGCGCCTGGCAGAAGAGGGGCGGAACTACCAGGGCTTGAAGGACAGC < 2:1330432/92‑1 TCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATGGCGCCTGGCAGAAGAGGGGCAGAACTACCAGGGCTTGAAGGACAGCGTACGACGGGAGCTGGCGATCGCCTGGCTCAGCCAGGAAGACGTGGCCATGGGCGAGCTTGCCGAGCGTTTGG < 1:600517/150‑1 TGCCAGGCGC‑‑‑CGACGCAGGGTCGATGGCGACAGGCAGAAGAGGGGCAGAACTACCAGGGCTTGAAGGACAGCGTACGACGGGAGCTGGCGATCGCCTGGCTCAGCCAGGAAGACGTGGCCATGGGCGAGCTTGCCGAGCGTTTGGGGTTC > 2:1213882/1‑150 CCAGGCGC‑‑‑CGACGCAGGGTCGATGGCGACAGGCAGAAGAGGGGCAGAACTACCAGGGCTTGAAGGACAGCGTACGACGGGAGCTGGCGATCGCCTGGCTCAGCCAGGAAGACGTG > 1:870903/1‑115 CCAGGCGC‑‑‑CGACGCAGGGTCGATGGCGACAGGCAGAAGAGGGGCAGAACTACCAGGGCTTGAAGGACAGCGTACGACGGGAGCTGGCGATCGCCTGGCTCAGCCAGGAAGACGTG < 2:870903/115‑1 TGCTGTCGGCGAACCCCAAACGCTCGGCAAGCTCGCCCATGGCCACGTCTTCCTGGCTGAGCCAGGCGATCGCCAGCTCCCGTCGTACGCTGTCCTTCAAGCCCTGGTAGTTCTGCCCCTCTTCTGCCAGGCGC‑‑‑CGACGCAGGGTCGATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2518557‑2518405‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgCCTGGCAGAAGAGGGGCAGAACTACCAGGGCTTGAAGGACAGCGTACGACGGGAGCTGGCGATCGCCTGGCTCAGCCAGGAAGACGTGGCCATGGGCGAGCTTGCCGAGCGTTTGGGGTTC > NC_002947/2518427‑2518547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |