| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2577157 = | 42 (0.800) | 4 (0.080) | 4/224 | NT | 9.5% | coding (1281/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | 2577227 = | 38 (0.790) | coding (1211/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator | |||||
GTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2577313‑2577157‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcagtggcATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAG > NC_002947/2577227‑2577373 GTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGG > 1:781728/1‑150GTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGG > 2:1353059/1‑150 CACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTG < 1:28449/139‑1 CACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTG > 2:28449/1‑139 GCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGG < 1:880818/108‑1 GCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGG > 2:880818/1‑108 GACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGG > 2:99117/1‑150 ATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCG > 1:258390/1‑150 CCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTC < 2:258390/150‑1 TCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCC < 1:99117/150‑1 AGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACAAGCTCGGCAGGGATCtctaca > 2:790693/1‑144 GGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAG < 2:365121/150‑1 GTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2577313‑2577157‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcagtggcATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCACAG > NC_002947/2577227‑2577373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |