| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2850023 = | 55 (1.050) | 4 (0.080) | 4/236 | NT | 7.2% | coding (116/927 nt) | PP_2502 | LysR family transcriptional regulator |
| ? | NC_002947 | 2850064 = | 51 (1.010) | coding (75/927 nt) | PP_2502 | LysR family transcriptional regulator | |||||
GGCAGCGAGAACTTCAGTTGATACATGGTGTAATCAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2850174‑2850023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtGAAGCTGCCCAGCTCCGCCGCCAGGCAGAACAGCTCGATGCTGCCGAGTAGGACGTCGTCGAAATGCCGCTGCATTGATTACACCATGTATCAACTGAAGTTCTCGCTGCCATATTTATCCTTATCTAAAGCAAAAATATAGTCCT > NC_002947/2850064‑2850209 GGCAGCGAGAACTTCAGTTGATACATGGTGTAATCAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCG < 1:1367841/150‑1 GCAGCGAGAACTTCAGTTGATACATGGTGTAATCAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGG > 2:1144665/1‑150 CAGCGAGAACTTCAGTTGATACATGGTGTAATCAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGT > 2:731372/1‑150 GATACATGGTGTAATCAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCG < 1:1218945/131‑1 GATACATGGTGTAATCAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCG > 2:1218945/1‑131 CAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGT > 1:519484/1‑118 CAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGT < 2:519484/118‑1 ACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGTGAAGCTGCCCAGCTCCGCCGCCAGGCAGAACAGCTCGATGCTGCCGAGTAGGACGTCGTCGAAATGCCGCTGCATTGATTACACCATG > 1:899010/1‑129 ACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGTGAAGCTGCCCAGCTCCGCCGCCAGGCAGAACAGCTCGATGCTGCCGAGTAGGACGTCGTCGAAATGCCGCTGCATTGATTACACCATG < 2:899010/129‑1 CGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGTGAAGCTGCCCAGCTCCGCCGCCAGGCAGAACAGCTCGATGCTGCCGA < 1:966699/86‑1 CGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGTGAAGCTGCCCAGCTCCGCCGCCAGGCAGAACAGCTCGATGCTGCCGA > 2:966699/1‑86 CGGTGAAGCTGCCCAGCTCCGCCGCCAGGCAGAACAGCTCGATGCTGCCGAGTAGGACGTCGTCGAAATGCCGCTGCATTGATTACACCATGTATCAACTGAAGTTCTCGCTGCCATATTTATCCTTATCTAAAGCAAAAATATAGTCCT < 1:515750/150‑1 GGCAGCGAGAACTTCAGTTGATACATGGTGTAATCAATGCAGCGGCATTTCGACGACGTCCTACTCGGCAGCATCGAGCTGTTCTGCCTGGCGGCGGAGCTGGGCAGCTTCACCGCGGCCGCTCTCGCGGCGGGCGTGACGCCGGCAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2850174‑2850023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtGAAGCTGCCCAGCTCCGCCGCCAGGCAGAACAGCTCGATGCTGCCGAGTAGGACGTCGTCGAAATGCCGCTGCATTGATTACACCATGTATCAACTGAAGTTCTCGCTGCCATATTTATCCTTATCTAAAGCAAAAATATAGTCCT > NC_002947/2850064‑2850209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |