New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 287292962 (1.180)6 (0.120) 6/232 NT 8.9% coding (189/1164 nt) PP_2525 hypothetical protein
?NC_002947 = 2872955 64 (1.290)coding (163/1164 nt) PP_2525 hypothetical protein

GGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2872776‑2872929
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgaaGCCCTCGCCCGTGAAGGCGGGCTGGATTCGACCTGGTGGGCTGG  <  NC_002947/2872955‑2872912
                                                                                                                                                                                                      
GGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCACCGGCGCAGGGGCCTGACTTCGTTCGGATGCTCGCCCAGGATGAGGATGTCTCCTCGCCGTATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGT                                                  <  1:1097285/150‑1
    ATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGTGCACTACGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAA                                              <  2:165676/150‑1
    ATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAA                                              >  2:1033988/1‑150
                     GATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATGCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAGCCCTCGCCCGTGAAGG                             >  1:1360518/1‑150
                                    GTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAGCCCTCGCCCGTGAAGGCGGGCTGGATTCGAC              <  1:321825/150‑1
                                       TTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAGCCCTCGCCCGTGAAGGCGGGCTGGATTCGACCTG           <  2:1079742/150‑1
                                                AAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAGCCCTCGCCCGTGAAGGCGGGCTGGATTCGACCTGGTGGGCTGG  <  2:1360518/150‑1
                                                                                                  GCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAGCCCTCGCCCGTGAAGGCGGGCTGGAT                   >  1:351846/1‑83
                                                                                                  GCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAGCCCTCGCCCGTGAAGGCGGGCTGGAT                   <  2:351846/83‑1
                                                                                                                                                                                                      
GGGAATTGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2872776‑2872929
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgaaGCCCTCGCCCGTGAAGGCGGGCTGGATTCGACCTGGTGGGCTGG  <  NC_002947/2872955‑2872912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.