| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3295042 | 54 (1.030) | 4 (0.080) | 4/230 | NT | 7.1% | intergenic (‑34/+42) | PP_2894/PP_2895 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 3295053 | 54 (1.100) | intergenic (‑45/+31) | PP_2894/PP_2895 | hypothetical protein/hypothetical protein | |||||
GCAGGTCAATGGAGGTCATGGGGGCGGGGGGCTTTTGCAATGATTCGACTCCTCAGGCCAGGTTGTGCCCCTC‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3294969‑3295042‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccctc‑‑‑cTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGCCTGCAAGAAGCCGCCAGTGCCACCAACAGCCTGATTGCCCAG < NC_002947/3295053‑3294910 GCAGGTTAATGGAGGTCATGGGGGCGGGGGGCTTTTGCAATGATTCGACTCCTCAGGCCAGGTTGTGCCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAG < 1:880327/108‑1 AGGTCAATGGAGGTCATGGGGGCGGGGGGCTTTTGCAATGATTCGACTCCTCAGGCCAGGTTGTGCCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGC < 1:1140919/101‑1 AGGTCAATGGAGGTCATGGGGGCGGGGGGCTTTTGCAATGATTCGACTCCTCAGGCCAGGTTGTGCCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGC > 2:1140919/1‑101 CTCAGGCCAGGTTGTGCCCCTCCCACTACCGGCA‑‑‑GGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGC < 2:880327/108‑1 CCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAACAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGCCT < 2:642712/111‑1 CCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGCCTGCAAGAAGC < 1:23081/120‑1 CCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGCCTGCAAGAAGC > 2:23081/1‑120 CCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGCCT > 1:642712/1‑111 CCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGC > 1:1366604/1‑109 CCCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGC < 2:1366604/109‑1 CCCTC‑‑‑CTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGCCTGCAAGAAGCCGCCAGTGCCACCAACAGCCTGATTGCCCAG < 1:65539/150‑1 GCAGGTCAATGGAGGTCATGGGGGCGGGGGGCTTTTGCAATGATTCGACTCCTCAGGCCAGGTTGTGCCCCTC‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3294969‑3295042‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccctc‑‑‑cTGCCGGTAGTGGGAGGGGCACAACCTGGCCTGAGGAGTCGAATCATTGCAAAAGCCCCCCGCCCCCATGACCTCCATTGACCTGCGTGAAATTACCCGTGGCCTGCAAGAAGCCGCCAGTGCCACCAACAGCCTGATTGCCCAG < NC_002947/3295053‑3294910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |