New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3299203 =	53 (1.010)	4 (0.080)	4/236	NT	7.4%	coding (1377/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ
	?	NC_002947	3299227 =	50 (0.990)					coding (1401/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ

ATTGCGGCTGACCAGTGGCGAGTAGCCGGTCAGCGGCTGCGCCGGGTTGGCCATCCAGGCCGGGTCGTTGGAGTTCTGTACGAAGTCTTCACGCTCCAGGCTTGGCAGCAGCCGCGCCGGGAAGATGCCCGGTTGCGCCGCCTGCGCGTCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3299356‑3299203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaccGGGCATCTTCCCGGCGCGGCTGCTGCCAAGCCTGGAGCGTGAAGACTTCGTACAGAACTCCAACGACCCGGCCTGGATGGCCAACCCGGCGCAGCCGCTGACCGGCTACTCGCCACTGGTCAGCCGCAATGACCAACCACTGGGCAT  >  NC_002947/3299227‑3299373                                                                                                                                                                                                                                                                                                               ATTGCGGCTGACCAGTGGCGAGTAGCCGGTCAGCGGCTGCGCCGGGTTGGCCATCCAGCCCGGGTCGTTGGAGTTCTGTACGAAGTCTTCACGCTCCAGGCTTGGCAGCAGCCGCGCCGGGAAGATGCCCGGTTGCGCCGCCTGCGCGTC                                                                                                                                                         >  1:392471/1‑150                                                                                                                             ATGCCCGGTTGCGCCGCCTGCGCGTCAACCGGGCATCTTCCCGGCGCGGCTGCTGCCAAGCCTGGAGCGTGAAGACTTCGTACAGAACTCCAACGACCCGGCCTGGAT                                                                       >  1:84905/1‑108                                                                                                                             ATGCCCGGTTGCGCCGCCTGCGCGTCAACCGGGCATCTTCCCGGCGCGGCTGCTGCCAAGCCTGGAGCGTGAAGACTTCGTACAGAACTCCAACGACCCGGCCTGGAT                                                                       <  2:84905/108‑1                                                                                                                                 CCGGTTGCGCCGCCTGCGCGTCAACCGGGCATCTTCCCGGCGCGGCTGCTGCCAAGCCTGGAGCGTGAAGACTTC                                                                                                    <  1:549270/75‑1                                                                                                                                 CCGGTTGCGCCGCCTGCGCGTCAACCGGGCATCTTCCCGGCGCGGCTGCTGCCAAGCCTGGAGCGTGAAGACTTC                                                                                                    >  2:549270/1‑75                                                                                                                                                        ACCGGGCATCTTCCCGGCGCGGCTGCTGCCAAGCCTGGAGCGTGAAGACTTCGTACAGAACTCCAACGACCCGGCCTGGATGGCCAACCCGGCGCAGCCGCTGACCGGCTACTCGCCACTGGTCAGCCGCAATGACCAACCACTGGGCAT  >  2:168752/1‑150                                                                                                                                                                                                                                                                                                               ATTGCGGCTGACCAGTGGCGAGTAGCCGGTCAGCGGCTGCGCCGGGTTGGCCATCCAGGCCGGGTCGTTGGAGTTCTGTACGAAGTCTTCACGCTCCAGGCTTGGCAGCAGCCGCGCCGGGAAGATGCCCGGTTGCGCCGCCTGCGCGTCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3299356‑3299203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaccGGGCATCTTCCCGGCGCGGCTGCTGCCAAGCCTGGAGCGTGAAGACTTCGTACAGAACTCCAACGACCCGGCCTGGATGGCCAACCCGGCGCAGCCGCTGACCGGCTACTCGCCACTGGTCAGCCGCAATGACCAACCACTGGGCAT  >  NC_002947/3299227‑3299373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.