New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3339160 =	40 (0.760)	3 (0.070)	3/202	NT	6.9%	intergenic (‑119/+124)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	3339248 =	48 (1.110)					intergenic (‑207/+36)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase

GGTACCTACGATGACTACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGCGAAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3339328‑3339160 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcaagcccgcgaagagGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGAC  >  NC_002947/3339248‑3339386                                                                                                                                                                                                                                                                                                                      GGTACCTACGATGACTACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAG                                                                                                                                                                <  2:842267/150‑1      CTACGATGACTACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGC                                                                                                                                                           >  2:1161496/1‑150        ACGATGACTACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAA                                                                                                                                                         >  1:524476/1‑150        ACGATGACTACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAA                                                                                                                                                         <  2:1268352/150‑1              ACTACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGC                                                                                                                                                   <  2:962933/150‑1                TACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGCGA                                                                                                                                                 >  1:622245/1‑150                 ACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGCGAA                                                                                                                                                >  1:464308/1‑150                                                         GCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGC                                                                                                                                                   <  1:815347/107‑1                                                         GCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGC                                                                                                                                                   >  2:815347/1‑107                                                                 ATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCC                                                                                                                                                     <  1:774690/97‑1                                                                 ATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCC                                                                                                                                                     >  2:774690/1‑97                                                                    TCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGCGCGGGCAAGCCCGCGAA                                                                                                                                                <  2:668497/99‑1                                                                    TCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGCGAA                                                                                                                                                >  1:668497/1‑99                                                                                                       CCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGC                                                          >  1:782677/1‑150                                                                                                                    CACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGA                                                                                                    <  2:99140/95‑1                                                                                                                    CACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGA                                                                                                    >  1:99140/1‑95                                                                                                                                                              GCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTACCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGA   <  2:1240671/150‑1                                                                                                                                                               CCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGAC  >  1:1134999/1‑150                                                                                                                                                               CCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGAAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGAC  >  1:807386/1‑150                                                                                                                                                                                                                                                                                                                      GGTACCTACGATGACTACCTGCGTAGCCAGGGTGTGCTGGTCTGATTGATGGGACGGCCTGGCCATCTCGGATGGCCGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACCGCACAGGTATTGGACGCTTGTGGGGCCTTGGGAGAGCGGGCAAGCCCGCGAAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3339328‑3339160 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcaagcccgcgaagagGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGAC  >  NC_002947/3339248‑3339386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.