| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3656930 = | 57 (1.080) | 4 (0.080) | 4/244 | NT | 6.6% | coding (411/909 nt) | PP_3221 | ABC transporter permease |
| ? | NC_002947 | 3656963 = | 57 (1.090) | coding (378/909 nt) | PP_3221 | ABC transporter permease | |||||
CTGGGCGTGCTGGCCGGTTTTGCCGGCGGGCACGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3656965‑3656930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAGGCGCGCGCCATACACCACCCGGGTGTAGAGGTCGCGGCCCAGTTCGTCGGTGCCGAACCAGTGCGCCAGGCTGGGTGGACTGAGCTTGT > NC_002947/3656963‑3657111 CTGGGCGTGCTGGCCGGTTTTGCCGGCGGGCACGTCCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAG < 1:1349212/96‑1CTGGGCGTGCTGGCCGGTTTTGCCGGCGGGCACGTCCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAG > 2:1349212/1‑96 TGCTGGCCGGTTTTGCCGGCGGGCACGTCCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGG < 1:441400/72‑1 TGCTGGCCGGTTTTGCCGGCGGGCACGTCCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGG > 2:441400/1‑72 CCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAGGCGCGCGCCATACACCACCCGGGTGTAGAGGTCGCGGCCCAGTTCGTCGGTGCCGAACCAGTGCGCCAGGCTGGGTGGACTGAGCTTGT > 2:865092/1‑150 CCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAGGCGCGCGCCATACACCACCCGGGTGTAGAGGTCGCGGCCCAGT > 1:31337/1‑104 CCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAGGCGCGCGCCATACACCACCCGGGTGTAGAGGTCGCGGCCCAGT > 1:743279/1‑104 CCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAGGCGCGCGCCATACACCACCCGGGTGTAGAGGTCGCGGCCCAGT < 2:31337/104‑1 CCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAGGCGCGCGCCATACACCACCCGGGTGTAGAGGTCGCGGCCCAGT < 2:743279/104‑1 CTGGGCGTGCTGGCCGGTTTTGCCGGCGGGCACGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3656965‑3656930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCCCAAGCCGCCCAGCAAGGCGATGGCCACCGCCAGCAGGGCGGCGAGCACCGACAGGCGCGCGCCATACACCACCCGGGTGTAGAGGTCGCGGCCCAGTTCGTCGGTGCCGAACCAGTGCGCCAGGCTGGGTGGACTGAGCTTGT > NC_002947/3656963‑3657111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |