| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3999816 = | 54 (1.030) | 3 (0.060) | 3/234 | NT | 5.3% | coding (457/987 nt) | PP_3528 | ABC transporter substrate‑binding protein |
| ? | NC_002947 | 3999856 = | 56 (1.120) | coding (497/987 nt) | PP_3528 | ABC transporter substrate‑binding protein | |||||
GGCGAGGAACGGGTCCCAAAGGGTCACGGCCTGCACGCTGCCCGATTGCAGGGCGGCCACGGCATCGGCGGCATTGTTGACGTATGCGGGGGTAATGTCCTTGTAACTGAGCCCAGCCTGCTGCAGGGCTACGGCCAGCAGGTACTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3999965‑3999816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCG > NC_002947/3999856‑4000002 GGCGAGGAACGGGTCCCAAAGGGTCACGGCCTGCACGCTGCCCGATTGCAGGGCGGCCACGGCATCGGCGGCATTGTTGACGTATGCGGGGGTAATGTCCTTGTAACTGAGCCCAGCCTGCTGCAGGGCTACGGCCAGCAGGTACTGGGC > 1:1321115/1‑150GGCGAGGAACGGGTCCCAAAGGGTCACGGCCTGCACGCTGCCCGATTGCAGGGCGGCCACGGCATCGGCGGCATTGTTGACGTATGCGGGGGTAATGTCCTTGTAACTGAGCCCAGCCTGCTGCAGGGCTACGGCCAGCAGGTACTGGGC < 2:327975/150‑1 TCCTTGTAACTGAGCCCAGCCTGCTGCAGGGCTACGGCCAGCAGGTACTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGA > 1:442605/1‑150 CTTGTAACTGAGCCCAGCCTGCTGCAGGGCTACGGCCAGCAGGTACTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGG > 1:1213008/1‑105 CTTGTAACTGAGCCCAGCCTGCTGCAGGGCTACGGCCAGCAGGTACTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGG < 2:1213008/105‑1 TGGGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTT < 1:89464/97‑1 TGGGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTT > 2:89464/1‑97 GGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCG > 1:782589/1‑150 GCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGC < 1:781486/146‑1 GCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGC > 2:781486/1‑146 GGCGAGGAACGGGTCCCAAAGGGTCACGGCCTGCACGCTGCCCGATTGCAGGGCGGCCACGGCATCGGCGGCATTGTTGACGTATGCGGGGGTAATGTCCTTGTAACTGAGCCCAGCCTGCTGCAGGGCTACGGCCAGCAGGTACTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3999965‑3999816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCCGCCGATGCCGTGGCCGCCCTGCAATCGGGCAGCGTGCAGGCCGTGACCCTTTGGGACCCGTTCCTCGCCGCCGCAGAAAGCCAGCCAGGGCTGAAGAACCTGCGCG > NC_002947/3999856‑4000002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |