| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4079458 = | 46 (0.880) | 4 (0.090) | 4/198 | NT | 10.5% | intergenic (‑218/+166) | sdaC/amaC | serine:H+ symport permease/D‑lysine aminotransferase |
| ? | NC_002947 | 4079575 = | 31 (0.730) | intergenic (‑335/+49) | sdaC/amaC | serine:H+ symport permease/D‑lysine aminotransferase | |||||
GAAGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4079630‑4079458‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacgcaaggccgctcccacaAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGC > NC_002947/4079575‑4079721 GAAGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTAT < 1:404064/150‑1 GTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGC < 2:445846/150‑1 TAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCG > 2:598346/1‑150 AACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGA > 1:1029931/1‑150 ACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGAC < 1:598346/150‑1 GCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAA < 1:371987/150‑1 CCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAG < 1:1302282/150‑1 CCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAG > 1:406813/1‑150 ACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCC > 2:332844/1‑150 GCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTC > 1:800940/1‑150 CAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGAATACGAGAGTGAGAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCC > 2:703167/1‑150 CTGCGGCCCCTCCTGTGGGGCGCGGTTGGCACTTGTGCCAGCTGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACA < 2:824963/150‑1 GCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGA > 1:939654/1‑127 GCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGA < 2:939654/127‑1 TCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGG > 1:608403/1‑126 TCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGG < 2:608403/126‑1 CTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGG > 2:785952/1‑118 CTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGG < 1:785952/118‑1 GACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCT < 2:463718/150‑1 AAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTT < 2:803861/50‑1 AAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTT > 1:803861/1‑50 TCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTAC > 1:48448/1‑150 CCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCGCGTTGGCGAGTTACTTCTGAGCGGCCGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTCCAC > 2:1032915/1‑150 CCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACA < 1:858019/125‑1 CCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACA > 2:858019/1‑125 CCACAAAGTCCAACCGCGCCCCACAGAAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACAC > 1:691795/1‑150 CACAACGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACG > 2:236644/1‑150 CACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGC < 2:1241954/130‑1 CACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGC > 1:1241954/1‑130 ACAAAGTCCAACCGCGCTCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGC > 2:262970/1‑150 ACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGC > 1:905953/1‑150 GAAGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4079630‑4079458‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacgcaaggccgctcccacaAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGC > NC_002947/4079575‑4079721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |