New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4093604 = | 57 (1.080) | 5 (0.100) | 4/240 | NT | 7.9% | coding (557/1581 nt) | PP_3602 | 2,5‑dioxovalerate dehydrogenase |
? | NC_002947 | 4093668 = | 61 (1.190) | coding (621/1581 nt) | PP_3602 | 2,5‑dioxovalerate dehydrogenase |
GGTCCGCTCAGCGGCGCGCACGATGGCGCAGGCGACCAGGTCGGCCGTGGCCATGTGGCCGCTGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4093671‑4093604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgGACCGGCATGCCCAAGGGCGTGTTCAACATGGTATTTGGTGGCGGCGTGGGCGAGTGGCTGGTCAAGCACCCGGCCATCCAGGCGGT > NC_002947/4093668‑4093754 GGTCCGCTCAGCGGCGCGCACGATGGCGCAGGCGACCAGGTCGGCCGTGGCCATGTGGCCGCTGTGCGGACCGGCATGCCCAAGGGCGTGTTCAACATGGTATTTGGTGGCGGCGTGGGC < 1:333183/120‑1 GGTCCGCTCAGCGGCGCGCACGATGGCGCAGGCGACCAGGTCGGCCGTGGCCATGTGGCCGCTGTGCGGACCGGCATGCCCAAGGGCGTGTTCAACATGGTATTTGGTGGCGGCGTGGGC > 2:333183/1‑120 GCTCAGCGGCGCGCACGATGGCGCAGGCGACCAGGTCGGCCGTGGCCATGTGGCCGCTGTGCGGACCGGCATGCCCAAGGGCGTGTTCAACATGGTATTTGGTGGCGGCGTGGGCGAGTGGCTGGTCAAGCACCCGGCCATCCAGGCGGT > 1:518792/1‑150 GCTCAGCGGCGCGCACGATGGCGCAGGCGACCAGGTCGGCCGTGGCCATGTGGCCGCTGAGCGGACCGGCATGCCCAAGGGCGTGTTCAACATGGTATTTGGTGGCGGCGTGGGCGAGTGGCTGGTCAAGCACCC < 1:1226981/135‑1 GCTCAGCGGCGCGCACGATGGCGCAGGCGACCAGGTCGGCCGTGGCCATGTGGCCGCTGAGCGGACCGGCATGCCCAAGGGCGTGTTCAACATGGTATTTGGTGGCGGCGTGGGCGAGTGGCTGGTCAAGCACCC > 2:1226981/1‑135 GGTCCGCTCAGCGGCGCGCACGATGGCGCAGGCGACCAGGTCGGCCGTGGCCATGTGGCCGCTGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4093671‑4093604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgGACCGGCATGCCCAAGGGCGTGTTCAACATGGTATTTGGTGGCGGCGTGGGCGAGTGGCTGGTCAAGCACCCGGCCATCCAGGCGGT > NC_002947/4093668‑4093754 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |