| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4276970 = | 67 (1.270) | 5 (0.100) | 5/240 | NT | 7.9% | coding (322/1236 nt) | glcF | glycolate oxidase iron‑sulfur subunit |
| ? | NC_002947 | 4277012 = | 52 (1.010) | coding (364/1236 nt) | glcF | glycolate oxidase iron‑sulfur subunit | |||||
TTGAACAGTGCCGGGCGCGGCACCACCGCACGCAGGCCCAGGCGCAACAGGCGCTGGCCGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4277037‑4276970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgGTGGTGCC‑GC‑GCCCG‑GCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCAAGTCACCACACCGGGCCAGCGTCCGGCAGTGCGCCATGCACGCCGGATACT > NC_002947/4277012‑4277160 TTGAACAGTGCCGGGCGCGGCACCACCGCACGCAGGCCCAGGCGCAACAGGCGCTGGCCGAGCGGGC‑GTGGCACCTGCTGCTCGACCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAA > 2:151716/1‑150 CACCGCACGCAGGCCCAGGCGCAACAGGCGCTGGCCGAGCGGGC‑GTGGTGCC‑GC‑GCCCG‑GCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCAAGTCACCA > 1:1072862/1‑150 ACCGCACGCAGGCCCAGGCGCAACAGGCGCTGGCCGAGCGGGCGGTGGTGCC‑GC‑GCCCG‑GCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCAAGTCACCA > 1:136961/1‑150 CGCACGCAGGCCCAGGCGCAACAGGCGCTGGCCGAGCGGGCGGTGGTGCC‑GC‑GCCCG‑GCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCA > 1:1318010/1‑117 CGCACGCAGGCCCAGGCGCAACAGGCGCTGGCCGAGCGGGCGGTGGTGCC‑GC‑GCCCG‑GCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCA < 2:1318010/117‑1 CGGTGGTGCC‑GC‑GCCCG‑GCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCAAGTCACCACACCGGGCCAGCGTCCGGCAGTGCGCCATGCACGCCGGATAC < 2:1121110/150‑1 GGTGGTGCC‑GC‑GCCCG‑GCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCAAGTCACCACACCGGGCCAGCGTCCGGCAGTGCGCCATGCACGCCGGATACT > 2:1284391/1‑150 TTGAACAGTGCCGGGCGCGGCACCACCGCACGCAGGCCCAGGCGCAACAGGCGCTGGCCGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4277037‑4276970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgGTGGTGCC‑GC‑GCCCG‑GCACTGTTCAAGGCCCTGACCCGCAGCGGCCAGGTGCTGCGCCCGCTGCTACCGGCCTCAGTCAAACGCAAGTTGCCGGCGCAAGTCACCACACCGGGCCAGCGTCCGGCAGTGCGCCATGCACGCCGGATACT > NC_002947/4277012‑4277160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |