New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4285440	67 (1.270)	5 (0.100)	5/238	NT	7.2%	coding (801/849 nt)	hbd	3‑hydroxybutyryl‑CoA dehydrogenase
	?	NC_002947	= 4285467	65 (1.280)					coding (828/849 nt)	hbd	3‑hydroxybutyryl‑CoA dehydrogenase

GGCATGCGCCTGGGCTGCAACCAGCCGATCGGCCCGCTGGCCTTGGCCGACCTGATCGGCCTGGACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4285288‑4285440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGACCATTTCCTTGAGCAGTGGAGCAGGGCGGTATTTGCTGTCGTTGAAGCCTTCGTGGAAGGCCTCCATGATTGCCAGCAGGGTGTCCAGGCCGATCAGGTCGGCCAAGGCCAGCGGGC  <  NC_002947/4285467‑4285319                                                                                                                                                                                                                                                                                                                GGCATGCGCCTGGGCTGCAACCAGCCGATCGGCCCGCTGGCCTTGGCCGACCTGATCGGCCTGGACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTC                                                                                                                                                          >  1:743991/1‑150    ATGCGCCTGGGCTGCAACCAGCCGATCGGCCCGCTGGCCTTGGCCGACCTGATCGGCCTGGACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCG                                                                                                                                                       <  2:743991/150‑1                                                  ACCTGATCGGCCTGGACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGAC                                                                                                                      >  1:936622/1‑137                                                  ACCTGACCGGCCTGGACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGAC                                                                                                                      <  2:936622/137‑1                                                    CTGATCGGCCTGGACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGACCATTTCCTTGAGCAG                                                                                                       >  1:79598/1‑150                                                        TCGGCCTGGAGACCCTTTTTTCAATTATGGAGGCCTTCCACTAAGGCTTCAACGACATCAAATACCGCCCTTCTCCCTTGCTCAAGGAAATGGTCTCTACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGACCATTTCCTTGAGCAGTGGA                                                                                                   <  2:136716/150‑1                                                           GCCTGGACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCGACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGACCATTTCCTTGAGCAGTGGAGCA                                                                                                <  2:79598/150‑1                                                                                                                                                        CGACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGACCATTTCCTTGAGCAGTGGAGCAGGGCGGTATTTGCTGTCGTTGAAGCCTTCGTGGAAGGCCTCCATGATTGCCAGCAGGGTGTCCAGGCCGATCAGGTCGGCCAAGGCCAGCGGG   >  1:376500/1‑150                                                                                                                                                         GACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGACCATTTCCTTGAGCAGTGGAGCAGGGCGGTATTTGCTGTCGTTGAAGCCTTCGTGGAAGGCCTCCATGATTGCCAGCAGGGTGTCCAGGCCGATCAGGTCGGCCAAGGCCAGCGGGC  <  1:990935/150‑1                                                                                                                                                                                                                                                                                                                GGCATGCGCCTGGGCTGCAACCAGCCGATCGGCCCGCTGGCCTTGGCCGACCTGATCGGCCTGGACACCCTGCTGGCAATCATGGAGGCCTTCCACGAAGGCTTCAACGACAGCAAATACCGCCCTGCTCCACTGCTCAAGGAAATGGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4285288‑4285440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgACCGCTCTTGCGCCCCAGCCAGCCGGCCGCGACCATTTCCTTGAGCAGTGGAGCAGGGCGGTATTTGCTGTCGTTGAAGCCTTCGTGGAAGGCCTCCATGATTGCCAGCAGGGTGTCCAGGCCGATCAGGTCGGCCAAGGCCAGCGGGC  <  NC_002947/4285467‑4285319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.