| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4902896 = | 77 (1.460) | 6 (0.130) | 6/224 | NT | 9.2% | intergenic (+37/+82) | PP_4310/PP_4311 | hydantoin racemase/D‑amino acid dehydrogenase small subunit |
| ? | NC_002947 | 4902953 = | 49 (1.020) | intergenic (+94/+25) | PP_4310/PP_4311 | hydantoin racemase/D‑amino acid dehydrogenase small subunit | |||||
CTGAACCTGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGTGCGCAGCGTTTGGCCAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4903055‑4902896‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcggcTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCCGG > NC_002947/4902953‑4903099 CTGACCCTGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCCGTGCGCAGGCTTTTGCGAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGG < 1:525862/150‑1 TGAACCTGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGTGCGCAGCGTTTGGCCAGGATGATGCGTTAAGCGGGACGGCCGCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGT > 2:43225/1‑150 TGAACCTGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGAGCGCAGCGTTTGGCCAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCGAAAGCCGCCCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGg > 2:302337/1‑149 CTGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGTGCGCAGCGTTTGGCCAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGGTGGTCCGGTAGGAG > 2:307931/1‑150 CTGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGTGCGCAGCGTTTGGCCAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAG > 2:269458/1‑150 CTGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGTGCGCAGCAGCTGGCCAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACCAGCACGCCACGGTCTCCAGGCTCGTCCTGGCCCGGTAAGAG > 2:556699/1‑150 TGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGTGCGCAGCGTTTGGCCAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGC > 2:1395583/1‑150 GGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGTGCGCAGCGTTTGGCCAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCG < 2:325192/150‑1 CTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACC > 1:51707/1‑150 GGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCG < 1:1211003/62‑1 GGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCG > 2:1211003/1‑62 CCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAG < 2:629581/127‑1 CCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAG > 1:629581/1‑127 GCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCA > 1:1312864/1‑150 ACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGCATCAGCCGCGAAGAGGCCGGTCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTG < 2:51707/150‑1 TCAGGCTTGTGCTGGTCCGGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACA < 2:1312864/150‑1 GTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGG < 2:1159710/150‑1 GCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCA < 2:1143332/101‑1 GCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCA > 1:1143332/1‑101 GGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCCGG > 1:1130260/1‑150 GGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAAATTTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCCGG > 1:25424/1‑150 CTGAACCTGGGGCATGGGGCGTTAGGGTTCACCTTGGCCTGTGGCAGTGCGCAGCGTTTGGCCAGGATGATGCGTTAAGCGGGCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGGACCCCACGGTATTCAGGCTTGTGCTGGTCCGGTAGGAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4903055‑4902896‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcggcTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCCGG > NC_002947/4902953‑4903099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |