| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4953266 = | 56 (1.070) | 4 (0.080) | 4/234 | NT | 7.2% | coding (1211/1692 nt) | PP_4363 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4953318 = | 50 (1.000) | coding (1159/1692 nt) | PP_4363 | two‑component system sensor histidine kinase/response regulator | |||||
GTGAAGTTGTTCGATGAGCTGATGCTGGCCCTGGAGCGTTTTGGTGGGCAGCCACGCGATGACATCAGCTTGTGCGATATTCGCATGTTCACTGCCGAGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4953417‑4953266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgctCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAAC > NC_002947/4953318‑4953466 GTGAAGTTGTTCGATGAGCTGATGCTGGCCCTGGAGCGTTTTGGTGGGCAGCCACGCGATGACATCAGCTTGTGCGATATTCGCATGTTCACTGCCGAGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCG > 2:637722/1‑150 GAAGTTGTTCGATGAGCTGATGCTGGCCCTGGAGCGTTTTGGTGGGCAGCCACGCGATGACATCAGCTTGTGCGATATTCGCATGTTCACTGCCGAGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCGCT < 2:1353155/150‑1 GAAGTTGTTCGATGAGCTGATGCTGGCCCTGGAGCGTTTTGGTGGGCAGCCACGCGATGACATCAGCTTGTGCGATATTCGCATGTTCACTGCCGAGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCGCT > 2:596725/1‑150 CGAGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCGCTCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCA < 1:901705/138‑1 CGAGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCGCTCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCA > 2:901705/1‑138 AGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCGCTCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGC < 1:150369/128‑1 AGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCGCTCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGC > 2:150369/1‑128 CCGCTCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCC > 2:1169416/1‑150 TCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAAC > 2:1027574/1‑150 TCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAAC < 2:131314/150‑1 GTGAAGTTGTTCGATGAGCTGATGCTGGCCCTGGAGCGTTTTGGTGGGCAGCCACGCGATGACATCAGCTTGTGCGATATTCGCATGTTCACTGCCGAGGAGCGGGTGGCGGCCCCGATGATCTACTCTGATAGTGGCCGCTCCAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4953417‑4953266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgctCCTCGGCAGTGAACATGCGAATATCGCACAAGCTGATGTCATCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAAC > NC_002947/4953318‑4953466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |