| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4962074 = | 64 (1.220) | 5 (0.100) | 5/238 | NT | 7.1% | coding (409/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC |
| ? | NC_002947 | 4962125 = | 69 (1.360) | coding (358/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC | |||||
GTGGAGCGGCATGCCGCCGGGCGTGTGACCGGCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4962143‑4962074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccCGGCGGCATGCCGCTCCACGAGGTTGAGCAGCGCCTTGGGCTCGAACGGTTTGACCAGGTAGTCGGCGGCGCCTTGGCGCATGGCCTCGACCGCACGCTCGACGGCG > NC_002947/4962125‑4962231 GTGGAGCGGCATGCCGCCGGGCGTGTGACCGGCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTC < 1:856025/67‑1GTGGAGCGGCATGCCGCCGGGCGTGTGACCGGCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTC > 2:856025/1‑67 GCGTGTGACCGGCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTCGCCCGGCGGCATGCCGCTCCACGAGGTTGAGCAGCGCCTTGGGCTCGAACGGTTTGACCAGGTAGTCGGCGGCGCCTTGGCGCATGGCCTCGACCGCACGCT < 1:100740/149‑1 GCGTGTGACCGGCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTCGCCCGGCGGCATGCCGCTCCACGAGGTTGAGCAGCGCCTTGGGCTCGAACGGTTTGACCAGGTAGTCGGCGGCGCCTTGGCGCATGGCCTCGACCGCACGCT > 2:100740/1‑149 ACCGGCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTCGCCCGGCGGCATGCCGCTCCACGAGGTTGAGCAGCGCCTTGGGCTCGAACGGTTTGACCAGGTAGTCGGCGGCGCCTTGGCGCATGGCCTCGACCGCACGCTCGACGGCG > 2:90703/1‑150 GCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTCGCCCGGCGGCATGCCGCTCCACGAGGTT < 1:461199/64‑1 GCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTCGCCCGGCGGCATGCCGCTCCACGAGGTT > 2:461199/1‑64 GTGGAGCGGCATGCCGCCGGGCGTGTGACCGGCGAAGAAGGGCCGGTGGCCTGCGAGCCGGCCAGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4962143‑4962074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccCGGCGGCATGCCGCTCCACGAGGTTGAGCAGCGCCTTGGGCTCGAACGGTTTGACCAGGTAGTCGGCGGCGCCTTGGCGCATGGCCTCGACCGCACGCTCGACGGCG > NC_002947/4962125‑4962231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |