New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5081636	63 (1.200)	5 (0.100)	5/238	NT	8.0%	intergenic (‑50/+53)	lysC/alaS	aspartokinase/alanine‑‑tRNA ligase
	?	NC_002947	= 5081683	54 (1.060)					intergenic (‑97/+6)	lysC/alaS	aspartokinase/alanine‑‑tRNA ligase

CGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5081529‑5081636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCATGTTGGATTGTTTTTTGGGGCCCTGTATGGGCTGAGGCACCATTGAAATGGCGTTGATCGTACAGAAATTTGGCGGCACCTCTGTCGGTTCCATCGAGC  <  NC_002947/5081683‑5081535                                                                                                                                                                                                                                                                   CGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCA                                                                                                             <  1:432987/150‑1                                                 TCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCAT                                                                                                    >  1:1308755/1‑111                                                 TCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCAT                                                                                                    <  2:1308755/111‑1                                                      GCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTC                                                                                                      >  1:6387/1‑104                                                      GCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTC                                                                                                      <  2:6387/104‑1                                                                                                         ATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCATGTTGGATTGTTTTTTGGGGCCCTGTATGGGCTGAGGCACCATTGAAATGGCGTTGATCGTACAGAAATTTGGCGGCACCTCTGTCGGTTCCATCG     >  2:1398136/1‑150                                                                                                            AGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCATGTTGGATTGTTTTTTGGGGCCCTGTATGGGCTGAGGCACCATTGAAATGGCGTTGATCGTACAGAAATTTGGCGGCACCTCTGTCGGTTCCATCGAGC  <  2:543028/150‑1                                                                                                                                                                                                                                                                   CGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5081529‑5081636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCATGTTGGATTGTTTTTTGGGGCCCTGTATGGGCTGAGGCACCATTGAAATGGCGTTGATCGTACAGAAATTTGGCGGCACCTCTGTCGGTTCCATCGAGC  <  NC_002947/5081683‑5081535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.