New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5172401 =	55 (1.050)	4 (0.080)	4/238	NT	6.6%	coding (607/1698 nt)	fadD‑I	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	5172437 =	60 (1.180)					coding (571/1698 nt)	fadD‑I	long‑chain‑fatty acid‑‑CoA ligase

CGTGCGTTTCAATGACGCCCTGGCGCTGGGCAAGGGCCAGCCCGTGACCGAAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5172456‑5172401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaGGGCGTCATTGAAACGCACGGCCTGCGGCAGGTTGTAGGCCGGCACCATCTTCTTCACGTACTTGATCACGCTGTTGATCAGCAGGCGCTTGAGTGGTGGCAGCAGGTCGGCAACTTCAGTGACGATAACGTGCCTGACCTGGGTTT  >  NC_002947/5172437‑5172583                                                                                                                                                                                                             CGTGCGTTTCAATGACGCCCTGGCGCTGGGCAAGGGCCAGCCCGTGACCGAAGCCAGGGCGTCATTGAAACGCACGGCCTGCGGCAGGTTGTAGGCCGGCACCATCTTCTTCACGTACTTGATC                                                                                 >  1:388730/1‑124 CGTGCGTTTCAATGACGCCCTGGCGCTGGGCAAGGGCCAGCCCGTGACCGAAGCCAGGGCGTCATTGAAACGCACGGCCTGCGGCAGGTTGTAGGCCGGCACCATCTTCTTCACGTACTTGATC                                                                                 <  2:388730/124‑1                 GCCCTGGCGCTGGGCAAGGGCCAGCCCGTGACCGAAGCCAGGGCGTCATTGAAACGCACGGCCTGCGGCAGGTTGTAGGCCG                                                                                                           <  1:1411294/82‑1                 GCCCTGGCGCTGGGCAAGGGCCAGCCCGTGACCGAAGCCAGGGCGTCATTGAAACGCACGGCCTGCGGCAGGTTGTAGGCCG                                                                                                           >  2:1411294/1‑82                                                      CCAGGGCGTCATTGAAACGCACGGCCTGCGGCAGGTTGTAGGCCGGCACCATCTTCTTCACGTACTTGATCACGCTGTTGATCAGCAGGCGCTTGAGTGGTGGCAGCAGGTCGGCAACTTCAGTGACGATAACGTGCCTGACCTGGGTTT  >  1:1390199/1‑150                                                                                                                                                                                                             CGTGCGTTTCAATGACGCCCTGGCGCTGGGCAAGGGCCAGCCCGTGACCGAAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5172456‑5172401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaGGGCGTCATTGAAACGCACGGCCTGCGGCAGGTTGTAGGCCGGCACCATCTTCTTCACGTACTTGATCACGCTGTTGATCAGCAGGCGCTTGAGTGGTGGCAGCAGGTCGGCAACTTCAGTGACGATAACGTGCCTGACCTGGGTTT  >  NC_002947/5172437‑5172583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.