| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5201225 = | 65 (1.240) | 3 (0.060) | 3/224 | NT | 4.7% | coding (338/498 nt) | PP_4582 | membrane protein |
| ? | NC_002947 | = 5201220 | 63 (1.320) | coding (343/498 nt) | PP_4582 | membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGCCCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5201384‑5201225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcacgcacgcCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGCCAGCCGCTGCGCGTGGCGCAGGCCGGGTCGAGCCCC < NC_002947/5201220‑5201073 TCGCCCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGC < 1:219448/150‑1TCGCCCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGC < 1:586508/150‑1 GCCCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGC > 2:1288889/1‑150 GCCCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGC > 1:877575/1‑150 CCCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCA > 2:755091/1‑150 CCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCAC < 2:1307040/150‑1 CCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCAC > 1:39692/1‑150 CCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACG > 1:687643/1‑150 CCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACG < 2:1179200/150‑1 GCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACGCAC < 1:467464/150‑1 CAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACGCACG > 1:971842/1‑150 AATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTGCTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACGCACGC > 2:1259265/1‑150 AACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACGCACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGG > 2:1154217/1‑150 GGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACGCACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCA < 1:1154217/150‑1 TTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACGCACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGC > 1:150102/1‑150 GCACGCACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGCCAGCCGCTGCGCGTGGCGCAGGCCGGGT < 1:133587/150‑1 GCACGCACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGC < 2:986343/122‑1 GCACGCACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGC > 1:986343/1‑122 CGCACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGCCAGCCGCTGCGCGTGGCGCAGGCCGGGTCGA < 2:878898/150‑1 CGCACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGCCAGCCGCTGCGCGTGGCGCAGGCCGGGTCGA < 1:1272185/150‑1 ACGCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGCCAGCCGCTGCGCGTGGCGCAGGCCGGGTCGAGCC > 1:816959/1‑150 GCCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGCCAGCCGCTGCGCGTGGCGCAGGCCGGGTCGAGCCCC < 2:1260745/150‑1 TCGCCCCTGCAATCGCCATCACTGCGCTGGATGTCGCTTTCAAGGTCGGCAACAACGCCTGGCGCGCTGTGTCCGACTTCGCCATGTACGGCATGATCGCCTTCGGCCTGTACTTCCTCTTCGTGCTGCTGCGCTGGCCGCTGGAAAAGCGCACGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5201384‑5201225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcacgcacgcCGTGAGCAGGCCGAAGCCGCCGCCAGGCGTCAGCGGGCCGAGGATGACCAGCTCGGCACCCAGGCGCCGCTGGCTGCCGAGCGCAGCGACCGTTACCGTGACGACTTGCCGCCAGCCGCTGCGCGTGGCGCAGGCCGGGTCGAGCCCC < NC_002947/5201220‑5201073 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |