| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5225869 | 48 (0.910) | 4 (0.080) | 4/236 | NT | 7.3% | coding (59/876 nt) | PP_4605 | AraC family transcriptional regulator |
| ? | NC_002947 | = 5225900 | 55 (1.090) | coding (90/876 nt) | PP_4605 | AraC family transcriptional regulator | |||||
CTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5225767‑5225869‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCATTGGGCGAGGCATGCATGGCGTTGAACACTTGCAACTGGGTGAGTGGCGTCATGGGCGGGTCCTCTTGCCTGCCATCCTACTGCGCCCTGGATCGAGTGACAGCTACCG < NC_002947/5225900‑5225755 CTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCT < 1:519283/136‑1CTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCT > 2:519283/1‑136 AACGCCATGCATGCCTCGCCCAATGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTG > 1:595213/1‑63 AACGCCATGCATGCCTCGCCCAATGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTG < 2:595213/63‑1 CCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCATTGGGCGAGGCATGCATGGCGTTGAACACTTGCAACTGGGTGAGTGGCGTCATGGGCGGGTCCTCTTGCCTGCCATCCTACTGCGCCCTGGATCGAGTGACAGCTACCG > 2:35906/1‑150 CTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5225767‑5225869‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCATTGGGCGAGGCATGCATGGCGTTGAACACTTGCAACTGGGTGAGTGGCGTCATGGGCGGGTCCTCTTGCCTGCCATCCTACTGCGCCCTGGATCGAGTGACAGCTACCG < NC_002947/5225900‑5225755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |