| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5430425 = | 87 (1.660) | 11 (0.240) | 10/216 | NT | 13.7% | intergenic (‑59/+102) | PP_4769/PP_4770 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 5430474 = | 62 (1.340) | intergenic (‑108/+53) | PP_4769/PP_4770 | hypothetical protein/hypothetical protein | |||||
CGACGGTGGTTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5430587‑5430425‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTT > NC_002947/5430474‑5430622 CGACGGTGGTTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGT > 2:231212/1‑150CGACGGTGGTTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGT < 1:837379/150‑1 ACGGTGGTTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGG < 2:719070/150‑1 CGGTGGTTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGG < 1:395494/150‑1 TTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGG > 2:1349378/1‑150 TTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGG < 1:763531/150‑1 TTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGG < 1:862611/150‑1 CGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑G < 1:777125/150‑1 GGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GG < 1:1383040/150‑1 GGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGGTCTGCGCAGCAGC‑‑CCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGT > 1:905220/1‑150 CCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTA < 1:1116388/100‑1 CCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTA > 2:1116388/1‑100 CCACGGGGGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACAGT > 1:494934/1‑150 CACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGAC > 1:675299/1‑87 CACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGAC < 2:675299/87‑1 ACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCC > 1:286816/1‑137 ACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCC < 2:286816/137‑1 GTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGG‑‑TCTGCG‑CAGCAGCCCCCGGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGC > 2:1341533/1‑150 GTGAGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTG < 2:387594/150‑1 CGGGCGTGTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGC < 2:777125/150‑1 GCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCAC > 1:344110/1‑150 GCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTT > 1:1176628/1‑150 CGACGGTGGTTTTGGCAGCGATGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5430587‑5430425‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTT > NC_002947/5430474‑5430622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |