| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5594170 | 20 (0.380) | 8 (0.200) | 7/190 | NT | 27.4% | intergenic (‑66/+79) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase |
| ? | NC_002947 | = 5594207 | 27 (0.670) | intergenic (‑103/+42) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5593995‑5594170‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcttgcccgcgaa‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCC < NC_002947/5594207‑5594064 ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCAC > 1:1017736/1‑150ATCAGGCCGATGCAGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCAC < 2:75388/150‑1 GGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTG < 2:45405/150‑1 CCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTG < 2:1098567/150‑1 CGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG < 1:1006880/150‑1 GAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGG > 2:454343/1‑150 AGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGC < 2:370986/150‑1 GGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCT > 1:530308/1‑150 AAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCTCTGCTGGATGGGGATTGGATAGTCGGGAGAGAACTGGCTGGGTGATCTCATGGTCATTTCCGCAGGAGCGATGTTAAGTGGCATACACCACCCTGTCGGAGCCCGCTTGC > 2:159950/1‑150 CAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGTTGGTCGGGAGAGAACTGGCTGGGTGATGTCATTGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCTTGTGGGAGCGGGCTTGCCCGCGAA < 2:175663/150‑1 TCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTTATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTT < 2:410645/128‑1 TCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTT > 1:410645/1‑128 GGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGT < 2:255762/150‑1 GGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACTACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG < 2:1048202/150‑1 TGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAA < 2:1152306/131‑1 TGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAA > 1:1152306/1‑131 ATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG > 2:1054438/1‑106 ATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG < 1:1054438/106‑1 GCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGC < 1:688552/79‑1 GCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGC > 2:688552/1‑79 CCTGTGGGAGCGGGCCTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCAGTGTTCACGGACAAGCCCGCTCCCACAGGGTGGTGTCTGCCCCTTAACATCACTCCCCCCGACATGACCATTACATCACCCAGCCAatgc > 2:702122/1‑146 GAGCGGGCTTGCCCGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGAACATGACCATGACATCACCCAGCCCATTCTCTCCCG > 2:564930/1‑150 CGCGAA‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACTATCCCATCCC > 1:159950/1‑150 ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5593995‑5594170‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcttgcccgcgaa‑‑‑‑‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCC < NC_002947/5594207‑5594064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |