| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5746768 | 49 (0.930) | 4 (0.080) | 4/234 | NT | 8.0% | coding (1262/1422 nt) | PP_5043 | PhoPQ‑activated pathogenicity‑like protein |
| ? | NC_002947 | = 5746784 | 45 (0.900) | coding (1246/1422 nt) | PP_5043 | PhoPQ‑activated pathogenicity‑like protein | |||||
GCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGGCTGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACGAACCGCGCCTGCCAGCCTTGCGCCGGCGGCGCCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5746615‑5746768‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagtGAGGCGTTCAGCCTTGACTGGGCGCCGCCGGCGCAAGGCTGGCAGGCGCGGTTCGTAGAGGCGCGGTTTGCTGATGGTTTCGTTGTCACCAGCCCGGTCAGCGTTTTGCCGCAGACTTATCCTGAGCATCCACCAGCGGATCAGGG < NC_002947/5746784‑5746639 GCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGGCTGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACGAACCGCGCCTGCCAGCCTTGCGCCGGCGGCGCC > 1:408010/1‑150GCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGGGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGGCTGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACGAACCGCGCCTGCCAGCCTTGCGCCGGCGGCGCC > 1:864658/1‑150 GGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGGCTGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACGAACCGCGCCTGCCAGCCTTGCGCCGGCGGCGCCCA < 1:177190/150‑1 CCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGGCTGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACGAACCGCGCCTGCCAGCCTTGCGCCGGCGGCGCCCAGTGAGGCGTTCAGCCTTGACT > 2:1243905/1‑150 GATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGGCTGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACCAACCGCGCCTGCAACCTGGGCGCCGGCAGCGCCCAGTGAGGCGTTCAGCCTTGACTGGGCGCCGCCGGCGCAA < 1:1243905/150‑1 TGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACGAACCGCGCCTGCCAGCCTTGCGCCGGCGGCGCCCAGTGAGGCGTTCAGCCTTGACTGGGCGCCGCCGG > 1:509269/1‑106 TGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACGAACCGCGCCTGCCAGCCTTGCGCCGGCGGCGCCCAGTGAGGCGTTCAGCCTTGACTGGGCGCCGCCGG < 2:509269/106‑1 CCCAGTGAGGCGTTCAGCCTTGACTGGGCGCCGCCGGCGCAAGGCTGGCAGGCGCGGTTCGTAGAGGCGCGGTTTGCTGATGGTTTCGTTGTCACCAGCCCGGTCAGCGTTTTGCCGCAGACTTATCCTGAGCATCCACCAGC > 1:1162868/1‑143 CCCAGTGAGGCGTTCAGCCTTGACTGGGCGCCGCCGGCGCAAGGCTGGCAGGCGCGGTTCGTAGAGGCGCGGTTTGCTGATGGTTTCGTTGTCACCAGCCCGGTCAGCGTTTTGCCGCAGACTTATCCTGAGCATCCACCAGC < 2:1162868/143‑1 CAGTGAGGCGTTCAGCCTTGACTGGGCGCCGCCGGCGCAAGGCTGGCAGGCGCGGTTCGTAGAGGCGCGGTTTGCTGATGGTTTCGTTGTCACCAGCCCGGTCAGCGTTTTGCCGCAGACTTATCCTGAGCATCCACCAGCGGATCAGGG < 1:973004/150‑1 CAGTGAGGCGTTCAGCCTTGACTGGGCGCCGCCGGCGCAAGGCTGGCAGGCGCGGTTCGTAGAGGCGCGGTTTGCTGATGGTTTCGTTGTCACCAGCCCGGTCAGCGTTTTGCCGCAGACTTATCCTGAGCATCCACCAGCGGATCAGGG < 2:757355/150‑1 GCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGGCTGGTGACAACGAAACCATCAGCAAACCGCGCCTCTACGAACCGCGCCTGCCAGCCTTGCGCCGGCGGCGCCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5746615‑5746768‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagtGAGGCGTTCAGCCTTGACTGGGCGCCGCCGGCGCAAGGCTGGCAGGCGCGGTTCGTAGAGGCGCGGTTTGCTGATGGTTTCGTTGTCACCAGCCCGGTCAGCGTTTTGCCGCAGACTTATCCTGAGCATCCACCAGCGGATCAGGG < NC_002947/5746784‑5746639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |