New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5756149	64 (1.220)	3 (0.060)	3/238	NT	4.5%	coding (1207/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	= 5756181	65 (1.280)					coding (1239/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
Rejected: Frequency below/above cutoff threshold.

TGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5756035‑5756149 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGC  <  NC_002947/5756181‑5756142                                                                                                                                                             TGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAAAAAACTGTGAGCAGGCCCGCGCGCCACGGCCTGGTCGGCCCACTGGCGCAGGG       <  1:682595/150‑1                                                   CCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAG         >  1:235087/1‑98                                                   CCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAG         <  2:235087/98‑1                                                                                                                 CCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGC  <  1:421205/43‑1                                                                                                                 CCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGC  >  2:421205/1‑43                                                                                                                                                             TGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5756035‑5756149 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGC  <  NC_002947/5756181‑5756142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.