New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5756724 =	68 (1.290)	4 (0.090)	4/220	NT	6.4%	intergenic (+345/‑343)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
	?	NC_002947	5756778 =	57 (1.210)					intergenic (+399/‑289)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

CTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5756882‑5756724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTAC  >  NC_002947/5756778‑5756926                                                                                                                                                                                                                                                                                                                      CTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAG                                                                                                                                                                >  2:536734/1‑150  TTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGG                                                                                                                                                               >  2:1057718/1‑150  TTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGG                                                                                                                                                               >  2:1081166/1‑150  TTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACACCGTGGTAGG                                                                                                                                                               >  1:910488/1‑150     AAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGC                                                                                                                                                            >  2:848319/1‑150                                                                                                             CCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCG                                                                             <  1:174147/125‑1                                                                                                             CCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCG                                                                             >  2:174147/1‑125                                                                                                                    TACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACC                                                                     >  1:859377/1‑126                                                                                                                    TACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACC                                                                     <  2:859377/126‑1                                                                                                                                                       GAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGA                                                >  1:690118/1‑112                                                                                                                                                       GAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGA                                                <  2:690118/112‑1                                                                                                                                                           GGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCAC                                                                                       <  2:853902/69‑1                                                                                                                                                           GGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGG                                                                            <  1:364686/80‑1                                                                                                                                                           GGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGG                                                                            >  2:364686/1‑80                                                                                                                                                             GTTTACCCGCGAATAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTA                                                        >  2:359151/1‑98                                                                                                                                                               TCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTAC  <  1:1132504/150‑1                                                                                                                                                                                                                                                                                                                      CTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5756882‑5756724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTAC  >  NC_002947/5756778‑5756926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.