New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5855012 =	62 (1.180)	3 (0.060)	3/234	NT	4.7%	coding (976/1392 nt)	tcyP	sodium/cystine symporter
	?	NC_002947	5855053 =	62 (1.240)					coding (1017/1392 nt)	tcyP	sodium/cystine symporter
Rejected: Frequency below/above cutoff threshold.

CCACCAGGGTGGCGATCCACAGCGGGTCGAAGGTGTCGATGCCTACTGCTGGCGCGACCATCACCGCCAGCATGGCCGGATAGAGCCCGGCGCAGCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5855165‑5855012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCTGTGGATCGCCACCCTGGTGGCCATCGTCACGCTGAGCTCTGCAGGGGTTGCCGGC  >  NC_002947/5855053‑5855200                                                                                                                                                                                                                                                                                                                CCACCAGGGTGGCGATCCACAGCGGGTCGAAGGTGTCGATGCCTACTGCTGGCGCGACCATCACCGCCAGCATGGCCGGATAGAGCCCGGCGCAGCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCG                                                                                                                                                          >  2:624381/1‑150      ctGGTGGCCATCCACAGCGGGTCGAAGGTGTCGATGCCTACTGCTGGCGCGACCATCACCGCCAGCATGGCCGGATAGAGCCCGGCGCAGCCGTTCTCGCCAATGGTGGTGCCGGACGATGCGCTGAAGCTGGCAGTCGATTGCGGCACa                                                                                                                                                     >  1:956518/3‑149                                            TACTGCTGGCGCGACCATCACCGCCAGCATGGCCGGATAGAGCCCGGCGCAGCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGG                                                                                                                                                         >  1:1045922/1‑108                                            TACTGCTGGCGCGACCATCACCGCCAGCATGGCCGGATAGAGCCCGGCGCAGCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGG                                                                                                                                                         <  2:1045922/108‑1                                                                                                               GTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCTGTGGATCGCCACC                                            >  1:1197659/1‑150                                                                                                                TGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGC                                                                                          >  1:745088/1‑103                                                                                                                TGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGC                                                                                          <  2:745088/103‑1                                                                                                                                                       GCACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCTGTGGATCGCCACCCTGGTGGCCATCGTCACGCTGAGCTCTGCAGGGGTTGCCG    <  1:334127/150‑1                                                                                                                                                         ACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCTGTGGATCGCCACCCTGGTGGCCATCGTCACGCTGAGCTCTGCAGGGGTTGCCGGC  >  1:425646/1‑150                                                                                                                                                         ACCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATACCGTCCGTCGACCCGCTGTGGATCGCCACCCTGGTGGCCATCGTCACGCTGAGCTCTGCAGGGGTTGCCGGC  >  1:799300/1‑150                                                                                                                                                                                                                                                                                                                CCACCAGGGTGGCGATCCACAGCGGGTCGAAGGTGTCGATGCCTACTGCTGGCGCGACCATCACCGCCAGCATGGCCGGATAGAGCCCGGCGCAGCCGTTCTGGCCAATGGTGGTGCCGAACGATGCGCTGAAGCTGGCGATCGATTGCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5855165‑5855012 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacCACCATTGGCCAGAACGGCTGCGCCGGGCTCTATCCGGCCATGCTGGCGGTGATGGTCGCGCCAGCAGTAGGCATCGACACCTTCGACCCGCTGTGGATCGCCACCCTGGTGGCCATCGTCACGCTGAGCTCTGCAGGGGTTGCCGGC  >  NC_002947/5855053‑5855200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.