| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5873948 | 49 (0.930) | 10 (0.200) | 8/240 | NT | 17.4% | coding (597/657 nt) | PP_5147 | haloacid dehalogenase‑like family hydrolase |
| ? | NC_002947 | = 5873965 | 47 (0.920) | coding (614/657 nt) | PP_5147 | haloacid dehalogenase‑like family hydrolase | |||||
CCGTGTTTCCGTGAAGGCAAAGTGACGCGGCTGGAGCGCTGGATGCTGGAGAACGGCTTTGATCTTGAGGACAGCTACTTCTACAGCGACTCGATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5873799‑5873948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccTCGG‑CCCGCAGGTCCGGGGCCGGGTCCACTGCCACTGCATGCGTCACCCGCTGCAACAACGGCAGGTCATTCATCGAGTCGCTGTAGAAGTAGCTGTCCTCAAGATCAAAGCCGTTCTCCAGCATCCAGCGCTCCAGCCGCGTCACTT < NC_002947/5873965‑5873818 CCGTGTTTCCGTGAAGGCAAAGTGACGCGGCTGGAGCGCTGGATGCTGGAGAACGGCTTTGATCTTGAGGACAGCTACTTCTACAGCGACTCGATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCGGCC > 2:650996/1‑150 AGTGACGCGGCTGGAGCGCTGGATGCTGGAGAACGGCTTTGATCTTGAGGAAAGCTACTTCTACAGCGACTCGATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCGGCCTCGG‑CCCGCAGGTCCGGGGC < 2:751848/150‑1 ACGCGGCTGGAGCGCTGGATGCTGGAGAACGGCTTTGATCTTGAGGACAGCTACTTCTACAGCGACTCGATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCGGCCTCGG‑CCCGCAGGTCCGGGGCCGGG < 1:1268501/150‑1 TTGAGGACAGCTACTTCTACAGCGACTCGATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCCGCCTCGG‑CCCGCAGGTCCGGGGCCGG > 1:1346844/1‑109 TTGAGGACAGCTACTTCTACAGCGACTCGATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCCGCCTCGG‑CCCGCAGGTCCGGGGCCGG < 2:1346844/109‑1 ACTCGATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCGGCCTCGG‑CCCGCAGGTCCGGGGCCGG > 2:1022962/1‑85 ACTCAATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCGGCCTCGG‑CCCGCAGGTCCGGGGCCGG < 1:1022962/85‑1 CTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCCGCCTCGG‑CCCGCAGGTCCGGGGCCGG > 1:31677/1‑71 CTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCCGCCTCGG‑CCCGCAGGTCCGGGGCCGG < 2:31677/71‑1 GCAGTGGACCCGGCCCCGGACCTGC‑GGGCCGAGGCCGGGTCCACTGCCACTGCATGCGTCACCCGCTGCAACAACGGCAGGTCATTCATC < 1:1124228/90‑1 GCAGTGGACCCGGCCCCGG‑ACCTGCGGGCCGAGGCCGGGTCCACTGCCACTGCATGCGTCACCCGCTGCAACAACGGCAGGTCATTCATC > 2:1124228/1‑90 GCCTCGG‑CCCGCAGGTCCGGGGCCGGGTCCACTGCCACTGCATGCGTCACCCGCTGCAACAACGGCAGGTCATTCAT > 1:283867/1‑77 GCCTCGG‑CCCGCAGGTCCGGGGCCGGGTCCACTGCCACTGCATGCGTCACCCGCTGCAACAACGGCAGGTCATTCAT < 2:283867/77‑1 CCTCGG‑CCCGCAGGTCCGGGGCCGGGTCCACTGCCACTGCATGCGTCACCCGCTGCAACAACGGCAGGTCATTCATCGAGTCGCTGTAGAAGTAGCTGTCCTCAAGATCAAAGCCGTTCTCCAGCATCCAGCGCTCCAGCCGCGTCACTT > 1:650996/1‑150 CCGTGTTTCCGTGAAGGCAAAGTGACGCGGCTGGAGCGCTGGATGCTGGAGAACGGCTTTGATCTTGAGGACAGCTACTTCTACAGCGACTCGATGAATGACCTGCCGTTGTTGCAGCGGGTGACGCATGCAGTGGCAGTGGACCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5873799‑5873948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccTCGG‑CCCGCAGGTCCGGGGCCGGGTCCACTGCCACTGCATGCGTCACCCGCTGCAACAACGGCAGGTCATTCATCGAGTCGCTGTAGAAGTAGCTGTCCTCAAGATCAAAGCCGTTCTCCAGCATCCAGCGCTCCAGCCGCGTCACTT < NC_002947/5873965‑5873818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |