New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5874614 | 58 (1.100) | 6 (0.130) | 5/224 | NT | 8.1% | intergenic (‑50/+98) | PP_5148/ilvA‑II | membrane protein/threonine deaminase |
? | NC_002947 | = 5874674 | 83 (1.740) | intergenic (‑110/+38) | PP_5148/ilvA‑II | membrane protein/threonine deaminase |
CTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5874460‑5874614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcttGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC < NC_002947/5874674‑5874526 CTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCG > 1:1333782/1‑150 GACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGG > 1:663028/1‑150 ACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATTATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGC < 1:323716/150‑1 CAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTA > 1:1002596/1‑150 CCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGC < 1:1138221/119‑1 CCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGC > 2:1138221/1‑119 GATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGGGATACCTTGGCAGGAGCGGGTA > 1:980124/1‑150 GATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTA > 1:730277/1‑150 ATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA < 2:730277/150‑1 GATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGGGATACCTTGGCAGGAGCGGGTAAGC < 2:980124/150‑1 GAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACGGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTAC < 2:1002596/150‑1 CTTGCCCGTTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTCAGACCGCGAAGAAGCTACCCCAAAATGCCAGTTTAAGGACGACCGAGTGATGGCTCACCTGCCCACGCTCAAGACCCTGCGCATCA < 2:368620/150‑1 TGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC < 1:1201318/150‑1 TGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC < 1:182389/150‑1 CTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5874460‑5874614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcttGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC < NC_002947/5874674‑5874526 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |