New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 590384244 (0.840)3 (0.070) 3/214 NT 6.6% intergenic (+42/+65) PP_5176/spuH hypothetical protein/spermidine/putrescine ABC transporter permease
?NC_002947 = 5903870 47 (1.030)intergenic (+70/+37) PP_5176/spuH hypothetical protein/spermidine/putrescine ABC transporter permease

CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5903678‑5903842
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAACAAT  <  NC_002947/5903870‑5903723
                                                                                                                                                                                                                                                                                                                         
CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATG                                                                                                                                                                     >  2:722229/1‑150
      CTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCT                                                                                                                                                               >  2:1216349/1‑150
               GAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGACGGCGCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                      <  1:738042/150‑1
               GAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                      >  2:1199496/1‑150
                                                 TTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGT                                                                                                                    <  1:1199496/150‑1
                                                     CAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGC                                                                                                                                                                    <  2:44451/98‑1
                                                     CAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGC                                                                                                                                                                    >  1:44451/1‑98
                                                            TTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCAC                                                                                                                                                          <  2:509858/101‑1
                                                            TTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCAC                                                                                                                                                          >  1:509858/1‑101
                                                                                                  ACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCC                                                                                                                        >  1:264439/1‑97
                                                                                                  ACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCC                                                                                                                        <  2:264439/97‑1
                                                                                                                                                     cCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAG                <  1:1420361/149‑1
                                                                                                                                                     GCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAG                <  1:1133048/150‑1
                                                                                                                                                       CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCA                         >  1:1334119/1‑139
                                                                                                                                                       CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCA                         <  2:1334119/139‑1
                                                                                                                                                       CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCAC                                                                                    >  1:1396908/1‑80
                                                                                                                                                       CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCAC                                                                                    <  2:1396908/80‑1
                                                                                                                                                          CTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGTCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATT           <  2:681935/150‑1
                                                                                                                                                           TCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTG          <  1:347875/150‑1
                                                                                                                                                            CCCACAGGGACCTCACAGCCTTCAGGGTGGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGG         <  2:677699/150‑1
                                                                                                                                                             CCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGC        >  1:643472/1‑150
                                                                                                                                                             CCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAG                        <  2:236026/134‑1
                                                                                                                                                             CCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAG                        >  1:236026/1‑134
                                                                                                                                                               ACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAA      >  2:990594/1‑150
                                                                                                                                                               ACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAA      >  1:1216349/1‑150
                                                                                                                                                                CAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAAC     <  1:180192/150‑1
                                                                                                                                                                   GGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAACAAT  >  2:283385/1‑150
                                                                                                                                                                                                                                                                                                                         
CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5903678‑5903842
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAACAAT  <  NC_002947/5903870‑5903723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.