New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5929320	72 (1.370)	8 (0.150)	7/242	NT	10.9%	coding (1124/1224 nt)	visC	ubiquinone biosynthesis oxidoreductase
	?	NC_002947	= 5929341	60 (1.160)					coding (1103/1224 nt)	visC	ubiquinone biosynthesis oxidoreductase

AGGACTGCTACGCAGCCCCGCCACGCTCAAGCCTTGGCCAGATCCGGCAGGTCACCACTCAAACCCAACGCCTGGCGCACAAACAGCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5929194‑5929320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcCGTTGCGCTGGTTGCGCAACAGCGGGTTGAAGCTGGTG  <  NC_002947/5929341‑5929304                                                                                                                                                                       AGGACTGCTACGCAGCCCCGCCACGCTCAAGCCTTGGCCAGATCCGGCAGGTCACCACTCAAACCCAACGCCTGGCGCACAAACAGCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGCTGTTGCGCTGGTTGCGCAACAGa                 <  2:979486/150‑2   GACTGCTACGCAGCCCCGCCACGCTCAAGCCTTGGCCAGATCCGGCAGGTCACCACTCAAACCCAACGCCTGGCGCACAAACAGCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGCCGTTGCGCTGGTTGCGCAACAGCGG               <  1:450987/150‑1                 CCCGCCACGCTCAAGCCTTGGCCAGATCCGGCAGGTCACCACTCAAACCCAACGCCTGGCGCACAAACAGCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGCTGTTGCGCTGGTTGCGCAACAGCGGG              >  1:655848/1‑137                 CCCGCCACGCTCAAGCCTTGGCCAGATCCGGCAGGTCACCACTCAAACCCAACGCCTGGCGCACAAACAGCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGCTGTTGCGCTGGTTGCGCAACAGCGGG              <  2:655848/137‑1                                                                                 AAACAGCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGCCGTTGCGCTGGTTGCGCAACAGCGGGTTGAAGCTGGT   <  1:692911/84‑1                                                                                 AAACAGCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGCCGTTGCGCTGGTTGCGCAACAGCGGGTTGAAGCTGGT   >  2:692911/1‑84                                                                                      GCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGCCGTTGCGCTGGTTGCGCAACAGCGGGTTGAAGCTGGTG  >  1:1320974/1‑80                                                                                      GCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGCCGTTGCGCTGGTTGCGCAACAGCGGGTTGAAGCTGGTG  <  2:1320974/80‑1                                                                                                                                                                       AGGACTGCTACGCAGCCCCGCCACGCTCAAGCCTTGGCCAGATCCGGCAGGTCACCACTCAAACCCAACGCCTGGCGCACAAACAGCGCCTTGGCCTCCGGCATCTGCTCCACCAGCTTCAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5929194‑5929320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcCGTTGCGCTGGTTGCGCAACAGCGGGTTGAAGCTGGTG  <  NC_002947/5929341‑5929304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.