| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6004640 = | 53 (1.010) | 5 (0.100) | 5/234 | NT | 9.8% | coding (513/891 nt) | PP_5259 | LysR family transcriptional regulator |
| ? | NC_002947 | 6004666 = | 42 (0.840) | coding (539/891 nt) | PP_5259 | LysR family transcriptional regulator | |||||
GAAGCGCGGCCCGTGGTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGCCAGCAGCTCTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6004793‑6004640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGT > NC_002947/6004666‑6004812 GAAGCGCGGCCCGTGGTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGCCAGCAGCTCTGG < 1:395633/150‑1 AGCGCGGCCCGTGGTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGCCAGCAGCTCTGGCG < 2:1239184/150‑1 AGCGCGGCCCGTGGTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGCCAGCAGCTCTGGCG < 2:974909/150‑1 GTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGCCAGCAGCTCTG > 1:1336770/1‑134 GTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGCCAGCAGCTCTG < 2:1336770/134‑1 TGACGCGCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCAGGGCTGCTGGCCGGGCGCAAGCTGGCCGGTGCCGAGGA < 2:624909/150‑1 CTTGCGCCCGGCCAGCAGCTCTGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGT < 1:283828/62‑1 CTTGCGCCCGGCCAGCAGCTCTGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGT > 2:283828/1‑62 TTGCGCCCGGCCAGCAGCTCTGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGG > 1:1073266/1‑60 TTGCGCCCGGCCAGCAGCTCTGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGG < 2:1073266/60‑1 GCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGATGAACATCGTCGCTCTCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGC < 2:749514/150‑1 GCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGT > 1:42137/1‑150 GAAGCGCGGCCCGTGGTAAGCGCTGACGCTCTGCAGGTCCTGCTCCAGGAACCACTCATGCCAGGCCTCCGGGCGCGAGGTGCTTTGCAGCAGCACCAGCTCGGCCAGCTCCTCGGCACCGGCCAGCTTGCGCCCGGCCAGCAGCTCTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6004793‑6004640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGT > NC_002947/6004666‑6004812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |