| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 741601 | 4 (0.080) | 5 (0.100) | 4/240 | NT | 56.2% | intergenic (+198/‑302) | PP_t12/PP_0635 | tRNA‑Thr/group II intron‑encoding maturase |
| ? | NC_002947 | = 741676 | NA (NA) | intergenic (+273/‑227) | PP_t12/PP_0635 | tRNA‑Thr/group II intron‑encoding maturase | |||||
CCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGG > NC_002947/741452‑741750 | cccGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTG > 1:890211‑M1/1‑150 (MQ=255) ccGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGTTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGgtgt > 2:343909/1‑150 (MQ=38) ttGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCgg < 2:334745/150‑1 (MQ=34) ttGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCgg > 2:271384/1‑150 (MQ=34) gtgCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGt < 1:363913/150‑1 (MQ=32) gggCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTGTACTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGAcc > 1:375039/1‑150 (MQ=12) tggCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcg > 1:884342‑M1/1‑76 (MQ=255) tggCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcg > 2:183479‑M1/1‑76 (MQ=255) cAAGTGGGTGACTTGGAGGTGAAAGTCCCCTACACACCCGTCCAGTGGAATTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagcattttgtctcgggcttccttcagattcgcggtcacccgcgacac < 1:453850‑M1/150‑79 (MQ=255) tGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacaccctt < 1:183479‑M1/150‑83 (MQ=255) gggTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttg < 2:884342‑M1/150‑84 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagcggactatcacctccaattctcccacttg < 2:799057‑M1/150‑148 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttg < 1:925488‑M1/150‑148 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttg < 1:753246‑M1/150‑148 (MQ=255) gTGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttg < 2:736247‑M1/150‑148 (MQ=255) tGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttgg < 1:1342159‑M1/150‑149 (MQ=255) tGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttgg > 2:1200275‑M1/1‑2 (MQ=255) tGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttgg > 2:384951‑M1/1‑2 (MQ=255) tGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcac > 1:597611‑M1/1‑2 (MQ=255) tGccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcac < 2:597611‑M1/131‑130 (MQ=255) gccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttggc < 2:915816‑M1/150‑150 (MQ=255) gccgcctctatccgcttcctgttcgtcaggccagcattttgcctcgggcttccttcagattcgcggtcacccgcgacacccttgcctccggctaacacttccccttgccgggtgtgtagaggactttcacctccaagtcacccacttggc < 2:1321264‑M1/150‑150 (MQ=255) | CCCGCCTTGTGCGGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGG > NC_002947/741452‑741750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |