New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1303123 =	48 (0.910)	5 (0.100)	4/236	NT	9.3%	coding (259/702 nt)	livF‑I	ABC transporter ATP‑binding protein
	?	NC_002947	1303149 =	52 (1.030)					coding (233/702 nt)	livF‑I	ABC transporter ATP‑binding protein

GACATGGTGCCGCCGCGCTGGATGTAACGCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAGGGTCATCAGCAAGGTCGACTTGCCGGCA  >  NC_002947/1302978‑1303271                                                                                                                                                  |                                                                                                                                                     tcaccctgatcggcgccaacggtgccggcaagtcgaccttgctgatgaccctgtgcggttcgccgcaggcgcacagcggcagcatcaagtatctgggggaagaactggtcggccagccgtcctcgcacatcatgcgcaagaccatCgcgg                                                                                                                                                  <  2:158237‑M1/5‑1 (MQ=255)    aTGGTGCCGCCGCGCTGGATGTAACGCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGcggcgg                                                                                                                                               >  2:896661/1‑150 (MQ=255)          ccgccgCGCTGGATGTAACGCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTcc                                                                                                                                         <  1:511229/150‑1 (MQ=255)                        gccggcaagtcgaccttgctgatgaccctgtgcggttcgccgcaggcgcacagcggcagcatcaagtatctgggggaagaactggtcggccagccgtcctcgcacatcatgcgcaagaccatCGCGGCGGCCTTCCGGCACCACCGCGAt                                                                                                                           >  2:39940‑M1/123‑150 (MQ=255)                           aCGCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGct                                                                                                                        >  2:19616/1‑150 (MQ=255)                             gCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCgg                                                                                                                                       >  1:1065373/1‑133 (MQ=255)                             gCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCgg                                                                                                                                       <  2:1065373/133‑1 (MQ=255)                             gCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGctct                                                                                                                      >  1:58522/1‑150 (MQ=255)                             gCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGctct                                                                                                                      >  2:399990/1‑150 (MQ=255)                              ctctTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAGACCGCCAATGGCCAGGTTTTCATCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCtt                                                                                                                     <  1:1032845/150‑1 (MQ=255)                              ctctTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACTGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCtt                                                                                                                     <  1:529355/150‑1 (MQ=255)                                ctTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTgc                                                                                                                   <  2:111176/150‑1 (MQ=255)                                 tttCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTgcg                                                                                                                  >  2:709478/1‑150 (MQ=255)                                       gcgcGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCatgat                                                                                                            >  2:31024/1‑150 (MQ=255)                                                   ttGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACgg                                                                                                <  1:1423523/150‑1 (MQ=255)                                                     gCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCt                                                                                              >  2:515745/1‑150 (MQ=255)                                                      cAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACcgcg                                                                                                                             <  2:858744/118‑1 (MQ=255)                                                      cAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACcgcg                                                                                                                             >  1:858744/1‑118 (MQ=255)                                                            cTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGAc                                                                                       <  1:31024/150‑1 (MQ=255)                                                            cTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGAc                                                                                       >  1:700379/1‑150 (MQ=255)                                                              tGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCa                                                                                     <  2:451669/150‑1 (MQ=255)                                                                tCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCGCCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGt                                                                                   >  2:458143/1‑150 (MQ=255)                                                                tCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGt                                                                                   >  1:993249/1‑150 (MQ=255)                                                                      ctcTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTcc                                                                             <  1:561006/148‑1 (MQ=255)                                                                        cTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTcccc                                                                           <  2:283908/150‑1 (MQ=255)                                                                        cTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCATACGAGAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTcccc                                                                           <  1:727626/150‑1 (MQ=255)                                                                         tCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGCACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCAGGATGTGCGAGGAGGGCTGGCCGACCAGttcttcacaa                                                                          >  2:561006/1‑146 (MQ=255)                                                                                aGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACt                                                                   <  1:896661/150‑1 (MQ=255)                                                                                     cccTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGAtg                                                              <  1:399990/150‑1 (MQ=255)                                                                                            tctgggggaagaactggtcggccagccgtcctcgcacatcatgcgcaagagcatCGCGGCGGCCTTCCGGCACCACCGCGa                                                                                                                            <  1:1419066‑M1/27‑1 (MQ=255)                                                                                            tctgggggaagaactggtcggccagccgtcctcgcacatcatgcgcaagagcatCGCGGCGGCCTTCCGGCACCACCGCGa                                                                                                                            >  2:1419066‑M1/55‑81 (MQ=255)                                                                                            cGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGc                                                       >  2:1237020/1‑150 (MQ=255)                                                                                              gTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCtg                                                     >  1:122965/1‑150 (MQ=255)                                                                                              gTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCtg                                                     >  2:1002899/1‑150 (MQ=255)                                                                                                 aagaaACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTgc                                                  <  2:58522/150‑1 (MQ=255)                                                                                                 aagaaACCGCCCATGGCCAGGTTTACATCACCAGTAAGACGGGCTAATGGGTGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTgc                                                  <  2:944619/150‑1 (MQ=255)                                                                                                      aCCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGa                                                                                                      >  2:1308544/1‑93 (MQ=255)                                                                                                      aCCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGa                                                                                                      <  1:1308544/93‑1 (MQ=255)                                                                                                      aCCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCGTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTg                                             >  2:761725/1‑150 (MQ=255)                                                                                                          cccATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGACACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGa                                                                >  1:1094466/1‑127 (MQ=255)                                                                                                          cccATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGACACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGa                                                                <  2:1094466/127‑1 (MQ=255)                                                                                                           ccATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTgcggcg                                        >  2:852411/1‑150 (MQ=255)                                                                                                             aTGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGaa                                      <  1:709478/150‑1 (MQ=255)                                                                                                                  cAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGca                                 >  1:338232/1‑150 (MQ=255)                                                                                                                  cAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGca                                 >  2:603891/1‑150 (MQ=255)                                                                                                                     gTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAg                              >  1:159350/1‑150 (MQ=255)                                                                                                                      ttttCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAgg                             <  1:19616/150‑1 (MQ=255)                                                                                                                       tttCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAggg                            >  1:108323/1‑150 (MQ=255)                                                                                                                          ccTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAGGGtca                         <  2:159350/150‑1 (MQ=255)                                                                                                                            tCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAGGGtcatc                       >  1:1149191/1‑150 (MQ=255)                                                                                                                              gACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAGGGTCATCAg                     <  2:338232/150‑1 (MQ=255)                                                                                                                               acatcatgcgcaagagcatCGCGGCGGCCTTCCGGCACCACCGCGa                                                                                                                            <  1:821286‑M1/27‑1 (MQ=255)                                                                                                                               acatcatgcgcaagagcatCGCGGCGGCCTTCCGGCACCACCGCGa                                                                                                                            >  2:821286‑M1/20‑46 (MQ=255)                                                                                                                                         gAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAGGGTCATCAGCAAGGTCGACt          >  1:1382429/1‑150 (MQ=255)                                                                                                                                              aaCACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTgc                                                  >  2:1246113/1‑105 (MQ=255)                                                                                                                                              aaCACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTgc                                                  <  1:1246113/105‑1 (MQ=255)                                                                                                                                              aaCACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAGGGTCATCAGCAAGGTCGACTTGCCg     >  2:1121691/1‑150 (MQ=255)                                                                                                                                                 acGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACgg                                                                                                >  1:173359/1‑56 (MQ=255)                                                                                                                                                 acGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACgg                                                                                                <  2:173359/56‑1 (MQ=255)                                                                                                                                                 acGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTgcg                                           <  2:461213/109‑1 (MQ=255)                                                                                                                                                 acGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTgcg                                           >  1:461213/1‑109 (MQ=255)                                                                                                                                                 acGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAGGGTCATCAGCAAGGTCGACTTGCCGGCa  >  2:77371/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GACATGGTGCCGCCGCGCTGGATGTAACGCTCTTTCAGGCGCGGGAACAGTTGCAGGACCTTGTCCAGTTGCTCCTGATAGTCGCCCTTGTCGGTGAAGAAACCGCCCATGGCCAGGTTTTCCTCGACCGTCAGACGAGCGAACACGCGGCGGCCTTCCGGCACCACCGCGATGCTCTTGCGCATGATGTGCGAGGACGGCTGGCCGACCAGTTCTTCCCCCAGATACTTGATGCTGCCGCTGTGCGCCTGCGGCGAACCGCACAGGGTCATCAGCAAGGTCGACTTGCCGGCA  >  NC_002947/1302978‑1303271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.