| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2138020 | 50 (0.950) | 4 (0.080) | 4/242 | NT | 7.5% | coding (80/933 nt) | yadG | ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 2138037 | 50 (0.970) | coding (97/933 nt) | yadG | ABC transporter ATP‑binding protein | |||||
TGCACTCACTGCGCCAGTGACTTTACCTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTCGGTCACGACCTGGACCGCGAGCCCT > NC_002947/2137874‑2138160 | tGCACTCAGTGCGCCAGTGACTTTACCTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGt > 2:55276/1‑150 (MQ=255) tGCGCCAGTGACTTTACCTGGCGTGTCCTGCCCCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAgg < 1:250696/150‑1 (MQ=255) cgcCAGTGACTTTACCTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAACGCCTCGCCGACGATGTTGCCGaaatcg < 2:167581/150‑5 (MQ=255) aCTTTACCTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCCAAGGCATCGACCTCGATGTTGCCGAAGGCGACttcttc < 2:821458/150‑1 (MQ=255) aCTTTACCTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACttcttc < 1:19090/150‑1 (MQ=255) aCTTTACCTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGA < 2:1399082‑M1/128‑1 (MQ=255) aCTTTACCTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGA > 1:1399082‑M1/1‑128 (MQ=255) tttACCTGGCGTGTCCCGCACCTTTTTCTTCGGTAAGTGACTCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGACTTACAGGCATTCACAGACAACGACCTGTATCTTGCCGACGGCGACTTCTTCGc > 2:156949/1‑150 (MQ=255) ccTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTg < 2:920304/150‑1 (MQ=255) cTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGc > 2:657054/1‑150 (MQ=255) tGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCt > 2:1067091/1‑150 (MQ=255) cTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGgcgc > 2:879139/1‑150 (MQ=255) tttttCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGcc > 2:1212570/1‑150 (MQ=255) tttttCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGcc > 1:595003/1‑150 (MQ=255) tAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATccac < 2:595003/150‑1 (MQ=255) ccGCTATGAGTTCCGCCCTGTCCATCTCACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCg < 1:1071637/150‑1 (MQ=255) ccGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATccaccagatcgg > 2:1033823/1‑144 (MQ=255) ccGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCg > 1:913681/1‑150 (MQ=255) cTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGTCCCCAACGGCGCCGGTAAATCCACCACCATCGGCa > 2:762854/1‑150 (MQ=255) aTGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCAtt < 1:1067091/150‑1 (MQ=255) ttCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGTCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATtctctc < 2:465368/150‑1 (MQ=255) ttCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGACTAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATtctctc > 1:601911/1‑150 (MQ=255) ccGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGa > 1:601457/1‑150 (MQ=255) cTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTg > 1:145869/1‑150 (MQ=255) tCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTGCAGACCCTCAAAGGTATCGACGTCGAAGTTGACGAAGGCGACTTCTTCGCCATGCTTGGGCCGTACTGTGCCGGTAAATCCACGACCAACGGTATTCTCTCGACCCTGGta > 2:1315087/1‑149 (MQ=255) cATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGaa < 2:451456/150‑1 (MQ=255) cATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGAAGTCGCCTTCGGCAACAtcgaggtcgatgcctttga > 1:952596‑M2/1‑80 (MQ=255) cATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGAAGTCGCCTTCGGCAACAtcgaggtcgatgcctttga < 2:952596‑M2/99‑20 (MQ=255) aTCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGAagtcgccttcggcaacatcga > 1:1352806‑M1/1‑62 (MQ=255) aTCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGAagtcgccttcggcaacatcga < 2:1352806‑M1/83‑22 (MQ=255) aTCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGCAGGCGACTTCTTCGCCTTGCTCGGCGCCAACGGCGCCGGTGAATCCACCCCCATCGGCATTCTCTGGACCCTGGTGAAc > 1:372701/1‑150 (MQ=255) tCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCgg < 2:16345/109‑1 (MQ=255) tCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCgg > 1:16345/1‑109 (MQ=255) ccGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACaa < 2:601911/150‑1 (MQ=255) gACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGa > 2:607633/1‑150 (MQ=255) gACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGa < 2:601457/150‑1 (MQ=255) aGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCa < 2:845761/150‑1 (MQ=255) gCTGACCAAGACATACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGCTGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCTCCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAg < 1:1360282/150‑1 (MQ=255) cTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGc > 1:351366/1‑150 (MQ=255) cTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGc < 1:1212570/150‑1 (MQ=255) gACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCgg < 2:145869/150‑1 (MQ=255) gACCAAAACCTACGGCAATGAATTTCAGGCACTCAGCGGCGTCGACGTCGATGGTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCCTTCTCTCGACCCTGGTGAACACCACCCGCgg > 2:235334/1‑150 (MQ=255) ccAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCCTCGGCATTCTCTCGACCCTGGTGAACAAGAc < 2:18367/142‑1 (MQ=255) ccAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGAc > 1:18367/1‑142 (MQ=255) tACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAAc < 1:105909/150‑1 (MQ=255) tACGGCAAAGGCTTTCAGGAACTCAAAGGCATCGACCTCGATGTTGCCGAAGACAACTTCTTCGCCTTGCTAGACCACAACGGCGCCGGTAAATAAACCCCCATGGGCAATCTCTGGAATCTCGTAAACAAGACCACCGACACATTTAAc > 2:690258/1‑150 (MQ=255) cGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACgt > 2:877254/1‑150 (MQ=255) aaTGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTc > 1:136155/1‑150 (MQ=255) aaTGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTc < 2:913681/150‑1 (MQ=255) aaTGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACAACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTc > 1:341438/1‑150 (MQ=255) tGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCCCTGGCTGTCGGCCTACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTCgg > 2:37457/1‑150 (MQ=255) ggCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACAACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTCGGt < 2:341438/150‑1 (MQ=255) gCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTCGGTc > 1:907366/1‑150 (MQ=255) tCAAAGGCATCGACCTCGAtgttgccgaaggcgacttcgaggtcgatgcctttgagggcctgaaagccattgccgtaggtcttggtcagctgtcggatg > 1:952596‑M1/1‑19 (MQ=255) tCAAAGGCATCGACCTCGAtgttgccgaaggcgacttcgaggtcgatgcctttgagggcctgaaagccattgccgtaggtcttggtcagctgtcggatg < 2:952596‑M1/99‑81 (MQ=255) tCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTCGGTCACGACCTGGAcc > 2:1178218/1‑150 (MQ=255) aGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAACAGATGTGTTCGGTCACGACCTGGACCGCGa < 1:37457/150‑1 (MQ=255) aTCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTCGGTCACGACCTGGACCGCGAGccc > 2:1208759/1‑150 (MQ=255) tCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGAAAAGTGAACGTGTTCGGTCACGACCTGGACCGCGAGCCCt > 2:1181971/1‑150 (MQ=255) tCGATGTTGCCGAAGGCGACTtcgaggtcgatgcctttgagggcctgaaagccattgccgtaggtcttggtcagctgtcggat > 1:1352806‑M2/1‑21 (MQ=255) tCGATGTTGCCGAAGGCGACTtcgaggtcgatgcctttgagggcctgaaagccattgccgtaggtcttggtcagctgtcggat < 2:1352806‑M2/83‑63 (MQ=255) | TGCACTCACTGCGCCAGTGACTTTACCTGGCGTGTCCTGCACCTTTTTCTTCGGTAAGTGACCCGCTATGAGTTCCGCCCTGTCCATCCGACAGCTGACCAAGACCTACGGCAATGGCTTTCAGGCCCTCAAAGGCATCGACCTCGATGTTGCCGAAGGCGACTTCTTCGCCTTGCTCGGCCCCAACGGCGCCGGTAAATCCACCACCATCGGCATTCTCTCGACCCTGGTGAACAAGACCAGCGGCACAGTGAACGTGTTCGGTCACGACCTGGACCGCGAGCCCT > NC_002947/2137874‑2138160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |