| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2143400 = | 52 (0.990) | 4 (0.080) | 4/234 | NT | 7.4% | coding (137/435 nt) | PP_1899 | ExbD/TolR family protein |
| ? | NC_002947 | 2143445 = | 51 (1.020) | coding (182/435 nt) | PP_1899 | ExbD/TolR family protein | |||||
AGGCAAGGCGTGAAGTTCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGA > NC_002947/2143255‑2143547 | tcggcgctgatggccagcggcaacttgttgtcgccgcccgactcgcgctctatggcctcgctcagggtggccaggtcgcttttgggcagcaggtggttgttcagcgaatacacgccttcggcgctgatggtgatttcaactcgctTGccc < 2:1245451‑M1/5‑1 (MQ=255) cAAGGCGTGAAGTTCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCCTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGaa < 2:924339/150‑1 (MQ=255) gCGTGAAGTTCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGcca > 1:934603/1‑150 (MQ=255) ttCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGcc < 2:1249479/150‑1 (MQ=255) ttCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGcc > 1:136760/1‑150 (MQ=255) aacttgttgtcgccgcccgactcgcgctctatggcctcgctcagggtggccaggtcgcttttgggcagcaggtggttgttcaccgaatacacgccttcggcgctgatggtgatttccaccagctTGCCCGAAGCCACCAGCGCCGAgccg < 1:897177‑M1/26‑1 (MQ=255) gCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGa > 2:357034/1‑150 (MQ=255) gggAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGaa < 2:634303/119‑1 (MQ=255) gggAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGaa > 1:634303/1‑119 (MQ=255) ccgactcgcgctctatggcctcgctcagggtggccaggtcgcttttgggcagcaggtggttgttcaccgaatacacgccttcggcgctgatggtgatttccaccagctTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCgg > 2:897177‑M1/109‑150 (MQ=255) gTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGTGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAg > 1:1245451/1‑150 (MQ=255) gTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAg > 2:189919/1‑150 (MQ=255) gTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAg > 1:699934/1‑150 (MQ=255) tCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGc < 2:136760/150‑1 (MQ=255) cATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCtggt < 2:570437/150‑1 (MQ=255) cATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCtggt < 1:357034/150‑1 (MQ=255) cATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGACGAGCCGGCGCCGGCCGACCCGGGCAAGCtggt < 1:897300/150‑1 (MQ=255) aaCCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGaa > 2:300393/1‑150 (MQ=255) ccTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAAt > 1:523768/1‑150 (MQ=255) cTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCtggtggcttc < 2:615924/149‑5 (MQ=255) cTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTCACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCtggtggcttc > 1:615924/1‑145 (MQ=255) tGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCa > 2:1197412/1‑150 (MQ=255) gCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGaa < 2:633368/96‑1 (MQ=255) gCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGaa > 1:633368/1‑96 (MQ=255) gCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCAcc < 2:1205769/150‑1 (MQ=255) aTCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGcc > 2:613831/1‑150 (MQ=255) tggtgTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCg > 1:1138005/1‑150 (MQ=255) ggtgATCGACCTGTTGCGGTTCTGCGTTGGTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCgt < 2:791692/150‑1 (MQ=255) gTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCg > 2:1002166/1‑150 (MQ=255) tgctgctgTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGa > 1:633332/1‑150 (MQ=255) gctgctgTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGaa < 1:1018947/150‑1 (MQ=255) gctgTTCTTCGTGGTTACCACCACCTTCTCCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGCCAGCAACACGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGaacaa > 2:1261892/1‑150 (MQ=255) ctgTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGaacaac < 2:934603/150‑1 (MQ=255) gtggttgttcaccgaatacacgccttcggcgctgatggtgatttccaccagctTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCaa > 2:302151‑M1/54‑99 (MQ=255) gtggttgttcaccgaatacacgccttcggcgctgatggtgatttccaccagctTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCaa < 1:302151‑M1/46‑1 (MQ=255) gTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCgtg < 2:1197171/133‑1 (MQ=255) gTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCgtg > 1:1197171/1‑133 (MQ=255) gTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAacca < 2:523768/150‑1 (MQ=255) ttcttcGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAaccac > 2:394011/1‑150 (MQ=255) ttcttcGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCAGGTGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAaccac > 2:1047263/1‑150 (MQ=255) ttctgcGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAaccac < 1:843812/150‑1 (MQ=255) ttcGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCa > 2:1258866/1‑115 (MQ=255) ttcGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCa < 1:1258866/115‑1 (MQ=255) caccaccTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAg > 2:391907/1‑150 (MQ=255) accaccTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGc > 1:936004/1‑150 (MQ=255) ccaccTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGTCGCGGGCAAGCTGGTGGAAATCACCATCAGCGACGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCg > 2:630353/1‑150 (MQ=255) caccTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCaaaa < 1:769408/146‑1 (MQ=255) caccTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCaaaa > 2:769408/1‑146 (MQ=255) cTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTAAACAACCACCTGCTGCCCACCCGCGAccg > 2:1148787/1‑149 (MQ=255) cTTCAACCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGt < 1:640081/120‑1 (MQ=255) cTTCAACCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGt > 2:640081/1‑120 (MQ=255) ttCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTg < 1:300393/150‑1 (MQ=255) cccGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGccc > 1:1090142/1‑149 (MQ=255) ccGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCAc > 1:534472/1‑150 (MQ=255) aaCGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAg > 1:742609/1‑150 (MQ=255) gTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCaaaaag > 2:303693/1‑145 (MQ=255) gTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATagag > 2:393450/1‑150 (MQ=255) gCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGa < 1:394011/150‑1 (MQ=255) gCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGa < 1:393450/150‑1 (MQ=255) gCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGa < 1:613747/150‑1 (MQ=255) gCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGa < 1:1197412/150‑1 (MQ=255) | AGGCAAGGCGTGAAGTTCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCGCCGAGCCGGCGCCGGCCGACCCGGGCAAGCTGGTGGAAATCACCATCAGCGCCGAAGGCGTGTATTCGGTGAACAACCACCTGCTGCCCAAAAGCGACCTGGCCACCCTGAGCGAGGCCATAGAGCGCGA > NC_002947/2143255‑2143547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |