New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2471529 =	48 (0.910)	6 (0.120)	5/242	NT	11.3%	coding (1051/1182 nt)	PP_2165	two‑component system response regulator
	?	NC_002947	2471558 =	47 (0.910)					coding (1080/1182 nt)	PP_2165	two‑component system response regulator

CCTGGAAGGCCGCGGCCTGCCGGTGGGGTTGTTCGATGAGGCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCAGGAACCTTCAATGAGTACCGGTAGAATTCA  >  NC_002947/2471381‑2471676                                                                                                                                                     |                                                                                                                                                     gtacgaaggtaccgctctgctcggcgaactgaattctaccggtcctcattgaaggttcctgctcaacaccaatagggcgatatcatccggcatctccccaagcgtagccaatccaaatcgttgacgcagcccatccagactgccacctgc                                                                                                                                                     >  2:300051‑M1/149‑150 (MQ=255)  cTGGAAGGCCGCGGCCTGCCGGTGGGGTTGTTCGATGAGGCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCGGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAgcc                                                                                                                                                    >  1:1397887/1‑150 (MQ=255)         gCCGCGGCCTGCCGGTGGGGTTGTTCGATGAGGCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGc                                                                                                                                             <  1:612734/150‑1 (MQ=255)                       gTGGGGTTGTTCGATGAGGCCACCTACCAGGACCTGGTGGTGGAGCTACTCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCGGGAGATC‑GTCAAg                                                                                                                              >  1:578614/1‑150 (MQ=255)                        gcgaactgaattctaccggtactcattgaaggttcctgctcaacaccaatagggcgatatcatccggcatctccccaagcgtagccaatccaaatcgttgacgcagcccatccagactgccacctGCTGCCTTGCCGGAGATC‑GTCAAgg                                                                                                                             >  2:73290‑M1/126‑150 (MQ=255)                                ttCGATGAGGCCACCTACCAGGACCTGGTGGTGGAGCTACCGCCGCAGTTCAGCCTCAGCAAGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAACGATAAAGAAGCCGCCTGGCCGGAGATC‑GCCAAGGAAGCAGGt                                                                                                                     >  2:232716/1‑150 (MQ=255)                                    aTGAGGACCACTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCa                                                                                                                 <  1:421496/150‑1 (MQ=255)                                      gAGGCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGt                                                                                                                     >  1:1051706/1‑144 (MQ=255)                                      gAGGCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGt                                                                                                                     <  2:1051706/144‑1 (MQ=255)                                        ggCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGc                                                                                                                                             >  2:456917/1‑119 (MQ=255)                                        ggCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGc                                                                                                                                             <  1:456917/119‑1 (MQ=255)                                        ggCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCt                                                                                                             >  1:778201/1‑150 (MQ=255)                                        cggtactcattgaaggttcctgctcaacaccaatagggcgatatcatccggcatctccccaagcgtagccaatccaaatcgttgacgcagcccatccagactgccacctGCTGCCTTGCCGGAGATC‑GTCAAgg                                                                                                                             <  1:537655‑M1/25‑1 (MQ=255)                                        cggtactcattgaaggttcctgctcaacaccaatagggcgatatcatccggcatctccccaagcgtagccaatccaaatcgttgacgcagcccatccagactgccacctGCTGCCTTGCCGGAGATC‑GTCAAgg                                                                                                                             >  2:537655‑M1/110‑134 (MQ=255)                                           ccccTACCAGGACCCGGGGGTGGTGCGACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGa                                                                                                          >  2:167310/3‑150 (MQ=255)                                           cACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGa                                                                                                          >  1:717738/1‑150 (MQ=255)                                            ttccgcaaGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCATCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGAt                                                                                                         >  2:1054876/8‑150 (MQ=255)                                                  cAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTg                                                                                                   >  1:76789/1‑150 (MQ=255)                                                                ggAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTgg                                                                                     >  1:521094/1‑150 (MQ=255)                                                                 gAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGa                                                                                    <  1:270152/150‑1 (MQ=255)                                                                  aGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGAt                                                                                   <  2:778201/150‑1 (MQ=255)                                                                                ttCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTggg                                                                     <  2:578614/150‑1 (MQ=255)                                                                                    gcctcagcctGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGgaga                                                                 <  1:1054876/150‑1 (MQ=255)                                                                                    catccggcatctccccaagcgtagccaatccaaatcgttgacgcagcccatccagactgccacctGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGt                                                                                                                     >  1:813478‑M1/66‑98 (MQ=255)                                                                                    catccggcatctccccaagcgtagccaatccaaatcgttgacgcagcccatccagactgccacctGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGt                                                                                                                     <  2:813478‑M1/33‑1 (MQ=255)                                                                                      ctcagcctGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATg                                                               >  1:158607/1‑150 (MQ=255)                                                                                       tcagcctGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTggg                                                                     >  2:820694/1‑143 (MQ=255)                                                                                       tcagcctGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTggg                                                                     <  1:820694/143‑1 (MQ=255)                                                                                       tcagcctGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGc                                                              <  1:232716/150‑1 (MQ=255)                                                                                       tcagcctGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGc                                                              >  2:115621/1‑150 (MQ=255)                                                                                         agcctGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCg                                                            >  1:1292789/1‑150 (MQ=255)                                                                                            ctgctgTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTAAGATTGGGGCAATACCGgat                                                         >  2:304588/1‑150 (MQ=255)                                                                                            ctGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGgat                                                         <  2:158607/150‑1 (MQ=255)                                                                                              gacgTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAgg                                                                                                                             >  1:1159199/4‑80 (MQ=255)                                                                                              gacgTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAgg                                                                                                                             <  2:1159199/77‑1 (MQ=255)                                                                                               aTGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGgatgat                                                      <  2:76789/150‑1 (MQ=255)                                                                                                  tCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATc                                                   >  2:1093201/1‑150 (MQ=255)                                                                                                    cGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGc                                                 >  1:924058/1‑150 (MQ=255)                                                                                                         gCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGCCTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTAt                                            <  2:521094/150‑1 (MQ=255)                                                                                                           aTTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCg                                                  <  1:289926/142‑1 (MQ=255)                                                                                                           aTTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCg                                                  >  2:289926/1‑142 (MQ=255)                                                                                                            ttCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTgg                                         <  2:1397887/150‑1 (MQ=255)                                                                                                               tGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAgg                                                                                                                             <  2:840429/63‑1 (MQ=255)                                                                                                               tGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAgg                                                                                                                             >  1:840429/1‑63 (MQ=255)                                                                                                                 gACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTg                                    >  2:208378/1‑150 (MQ=255)                                                                                                                   ccTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAg                                  <  1:304588/150‑1 (MQ=255)                                                                                                                     ttttGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGgt                                        <  2:32966/142‑1 (MQ=255)                                                                                                                     ttttGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGgt                                        >  1:32966/1‑142 (MQ=255)                                                                                                                       ttGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCAgg                              <  1:208378/150‑1 (MQ=255)                                                                                                                                agcccatccagactgccacctGCTGCCTTGACG‑ATCTCCGGCAAGGCGGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCAGGAACCTTCaa                     <  1:161864‑M1/129‑1 (MQ=255)                                                                                                                                 aTACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGCATGATATCGCCCTATTGGTGTTGAGCAGGAACCTTCAAt                    <  1:1136968/150‑1 (MQ=255)                                                                                                                                     gCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCAGGAACCTTCAATGAGt                >  2:1334749/1‑150 (MQ=255)                                                                                                                                         aaaGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTggg                                                                     <  1:746962/93‑1 (MQ=255)                                                                                                                                         aaaGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTggg                                                                     >  2:746962/1‑93 (MQ=255)                                                                                                                                         aaaGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCAGGAACGTTGAATGAGTACCg            >  1:107812/1‑150 (MQ=255)                                                                                                                                         aaaGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCAGGAACCTTCAATGAGTACCg            <  1:167310/150‑1 (MQ=255)                                                                                                                                                aagaagCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCATATTGATGTTGGTTAGGAACCTTCAATGAGTACCGGTAGAAt     >  2:114820/1‑150 (MQ=255)                                                                                                                                                  gaagCCGCCTTGCCGGAGATC‑GTCAAGGCAACAGGTGTCCGTCTAGATGGGCTGCGTCAACGATTTGGATTGGCTCCGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCACGAACCTTCAATGAGTACCGGTCGAATTc   >  1:47544/1‑150 (MQ=255)                                                                                                                                                   aagCCGCCTGGCGGGAGATC‑GGCAAGGGAGCAGGTGGCAGTCGGGGTGGGGTGCGGCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGTCCTATTGGTGTTGAGCAGGAACCTTCAATGAGTACCGGTAGAATTCa  <  2:455508/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCTGGAAGGCCGCGGCCTGCCGGTGGGGTTGTTCGATGAGGCCACCTACCAGGACCTGGTGGTGGAGCTACCCCCGCAGTTCAGCCTCAGCCTGATGTCCGATGGCATTCTGGACCTTTTGCCGGGTGATACGCTCAAAGATAAAGAAGCCGCCTTGCCGGAGATC‑GTCAAGGCAGCAGGTGGCAGTCTGGATGGGCTGCGTCAACGATTTGGATTGGCTACGCTTGGGGAGATGCCGGATGATATCGCCCTATTGGTGTTGAGCAGGAACCTTCAATGAGTACCGGTAGAATTCA  >  NC_002947/2471381‑2471676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.