New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3038086 =55 (1.050)4 (0.080) 4/234 NT 7.4% coding (315/1143 nt) gbd 4‑hydroxybutyrate dehydrogenase
?NC_002947 3038112 = 48 (0.960)coding (341/1143 nt) gbd 4‑hydroxybutyrate dehydrogenase

GACACCACACAACTGCCGATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGAGCGAGGTCGGGCGCGGTGCCA  >  NC_002947/3037937‑3038228
                                                                                                                                                     |                                                                                                                                                
gACACCACACAACTGCCGATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTg                                                                                                                                                  >  2:202004/1‑150 (MQ=255)
       cacaACTGCCGATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCgtgt                                                                                                                                           <  1:1130770/150‑1 (MQ=255)
         caACTGCCGATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCgtgtgt                                                                                                                                         <  2:40920/150‑1 (MQ=255)
          aaCTGCCGATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGtgtgtg                                                                                                                                        <  1:202004/150‑1 (MQ=255)
             tGCCGATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGccc                                                                                                                                     >  2:809369/1‑150 (MQ=255)
             tGCCGATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCAGCGCCATTTGTGGTGGCTCGGCGATAGACCTGGCCAAGGGGGTGGCCGTGTGTGccc                                                                                                                                     >  1:501943/1‑150 (MQ=255)
                 gATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCa                                                                                                                                 >  2:82154/1‑150 (MQ=255)
                      acgacgGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCacgacg                                                                                                                          <  2:1161984/150‑1 (MQ=255)
                        gacgGTACGCCACCCAACCCCAACGCGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATTGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGc                                                                                                                        >  1:38720/1‑150 (MQ=255)
                            gTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGt                                                                                                                    >  2:158008/1‑150 (MQ=255)
                            gTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGt                                                                                                                    >  1:535189/1‑150 (MQ=255)
                                gCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGaa                                                                                                                >  2:90000/1‑150 (MQ=255)
                                gCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGaa                                                                                                                <  1:158008/150‑1 (MQ=255)
                                          cccaacGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCg                                                                                                      >  1:392086/1‑150 (MQ=255)
                                                   cATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAg                                                                                             >  2:246378/1‑150 (MQ=255)
                                                    aTGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAgg                                                                                            <  1:82154/150‑1 (MQ=255)
                                                       ccGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGggcg                                                                                         <  1:1035443/150‑1 (MQ=255)
                                                        cgtgcgtgAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGggcgg                                                                                        <  2:392086/150‑1 (MQ=255)
                                                           gcgtgAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCt                                                                                     <  1:339164/150‑1 (MQ=255)
                                                                     gTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATc                                                                           >  2:482123/1‑150 (MQ=255)
                                                                          cATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCAcccc                                                                      >  2:287059/1‑150 (MQ=255)
                                                                          cATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCAcccc                                                                      >  1:907740/1‑150 (MQ=255)
                                                                              ttCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAg                                                                                             <  1:1324097/123‑1 (MQ=255)
                                                                              ttCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAg                                                                                             >  2:1324097/1‑123 (MQ=255)
                                                                                 aaGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAAcc                                                               >  2:1219438/1‑150 (MQ=255)
                                                                                    gCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACcgcg                                                            >  2:567197/1‑150 (MQ=255)
                                                                                    gCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTCGTGCCGGGCaca                                                                                                                               >  1:182789/1‑83 (MQ=255)
                                                                                           gCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGa                                                     >  1:1195586/1‑150 (MQ=255)
                                                                                               tgATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCAcccc                                                                      >  1:626359/1‑129 (MQ=255)
                                                                                               tgATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCAcccc                                                                      <  2:626359/129‑1 (MQ=255)
                                                                                                gATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCg                                                <  2:1159526/150‑1 (MQ=255)
                                                                                                 aTGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCgg                                               >  1:1375471/1‑150 (MQ=255)
                                                                                                    gCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGc                                            <  2:1120480/150‑1 (MQ=255)
                                                                                                       tcatcGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGc                                                                                  <  2:120264/109‑1 (MQ=255)
                                                                                                       tcatcGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGc                                                                                  >  1:120264/1‑109 (MQ=255)
                                                                                                       tcatcGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGa                                         <  1:246378/150‑1 (MQ=255)
                                                                                                        catcGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGAc                                        <  2:1195586/150‑1 (MQ=255)
                                                                                                         gatccgggccaggccgccctcgatcaccgcaaagctcttcaacgGGCCGTGTGTGCCCGGCACGACGGc                                                                                                                        >  2:207973‑M1/45‑69 (MQ=255)
                                                                                                         gatccgggccaggccgccctcgatcaccgcaaagctcttcaacgGGCCGTGTGTGCCCGGCACGACGGc                                                                                                                        <  1:207973‑M1/25‑1 (MQ=255)
                                                                                                          atccgggccaggccgccctcgatcaccgcaaagctcttcaacgGGc                                                                                                                                                >  2:1395014‑M1/44‑46 (MQ=255)
                                                                                                          atccgggccaggccgccctcgatcaccgcaaagctcttcaacgGGc                                                                                                                                                <  1:1395014‑M1/3‑1 (MQ=255)
                                                                                                              cATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCAcggc                                  >  1:1234608/1‑150 (MQ=255)
                                                                                                                       tggCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACggg                         <  1:90000/150‑1 (MQ=255)
                                                                                                                         gCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGa                       <  2:1375471/150‑1 (MQ=255)
                                                                                                                         gCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGAGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGa                       >  1:530868/1‑150 (MQ=255)
                                                                                                                          cTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGAg                      <  1:1219438/150‑1 (MQ=255)
                                                                                                                           tCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGTCGACCACGGCCGGCACGGGGAGc                     >  1:1316024/1‑150 (MQ=255)
                                                                                                                           tCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGAGc                     >  2:314212/1‑150 (MQ=255)
                                                                                                                           tCGGCGATCGACCTCGCCAGAAGCGTGGCCGTGTGTGCCCGGCACGACGGCACGTTGAACAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGAGATTGCGGTGCCGACCACGGCGGGCAAGGGGAGc                     >  2:554362/1‑150 (MQ=255)
                                                                                                                              gCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGAGCGAg                  >  2:91544/1‑150 (MQ=255)
                                                                                                                              gCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGAGCGAg                  <  1:482123/150‑1 (MQ=255)
                                                                                                                                      ccTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGAGCGAGGTCGGgcg          >  2:32694/1‑150 (MQ=255)
                                                                                                                                        tGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGAc                                        <  2:1129555/118‑1 (MQ=255)
                                                                                                                                        tGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGAc                                        >  1:1129555/1‑118 (MQ=255)
                                                                                                                                         ggCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGAGCGAGGTCGGGCGCgg       <  1:851914/150‑1 (MQ=255)
                                                                                                                                          gCCAAGGGGGTGGCCGTGTGTGCCCGGCACTACGGCCCGTTGAAGAGCTTTGCGGTGATCGAg                                                                                             <  1:1182968/63‑1 (MQ=255)
                                                                                                                                          gCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAg                                                                                             >  2:1182968/1‑63 (MQ=255)
                                                                                                                                             aaGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGa                                                                             >  2:1130898/1‑76 (MQ=255)
                                                                                                                                             aaGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGa                                                                             <  1:1130898/76‑1 (MQ=255)
                                                                                                                                              ttcaacgGGCCGTCGTGCCGGGCACACACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCAcg                                    >  2:836751‑M1/8‑116 (MQ=255)
                                                                                                                                              ttcaacgGGCCGTCGTGCCGGGCACACACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCAcg                                    <  1:836751‑M1/109‑1 (MQ=255)
                                                                                                                                              aGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCAAGGGGAGCGAGGTCGGGCGCGGTGCCa  >  1:203586/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                
GACACCACACAACTGCCGATCTACGACGGTACGCCACCCAACCCCAACGAGCATGCCGTGCGTGAGGCCGTGGCCATGTTCAAGGCAAATGGCTGTGATGGCATCATCGCCATTGGTGGTGGCTCGGCGATCGACCTGGCCAAGGGGGTGGCCGTGTGTGCCCGGCACGACGGCCCGTTGAAGAGCTTTGCGGTGATCGAGGGCGGCCTGGCCCGGATCACCCCGGCAACCGCGCCGGTGATTGCGGTGCCGACCACGGCCGGCACGGGGAGCGAGGTCGGGCGCGGTGCCA  >  NC_002947/3037937‑3038228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.