New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3673224 =51 (0.970)4 (0.080) 4/238 NT 7.5% coding (229/891 nt) PP_3237 universal stress protein family protein
?NC_002947 3673245 = 49 (0.960)coding (250/891 nt) PP_3237 universal stress protein family protein

GGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCGCGCTCAAGCGCGCCTTCTTCA  >  NC_002947/3673076‑3673371
                                                                                                                                                     |                                                                                                                                                   
ggCCCGACCAGCAGCGGCTAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCt                                                                                                                                                    <  2:659016/150‑1 (MQ=255)
    cGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGt                                                                                                                                                <  2:6056/150‑1 (MQ=255)
          gCATCGGCCAGCTTGCACATTGTCGCCTCCCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTcc                                                                                                                                          <  1:361132/150‑1 (MQ=255)
             tCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGc                                                                                                                                       <  1:1203769/150‑1 (MQ=255)
                     cTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGt                                                                                                                               >  1:1190425/1‑150 (MQ=255)
                      ttGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTg                                                                                                                              >  2:851918/1‑150 (MQ=255)
                        gCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGCGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTgac                                                                                                                            >  2:534810/1‑150 (MQ=255)
                        aagaaggcgcgcttgagcgcgggctcatgctcgacctgcttgagcagcaggtccggtcgcatctccatgacgtgttccaggatgtcatcctgcaggtcattgctccacgccacctcggtcgtcacCTGCGTGCCTCCGGCGTGCAGGTga                                                                                                                             >  1:1192974‑M1/126‑150 (MQ=255)
                          acaTTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTgacga                                                                                                                          >  1:846928/1‑150 (MQ=255)
                          acaTTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTgacga                                                                                                                          >  2:185250/1‑150 (MQ=255)
                                         tCGAAGCACTGGACAAACTGTTGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGa                                                                                                           <  1:433415/150‑1 (MQ=255)
                                           gAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGc                                                                                                         >  2:1011095/1‑150 (MQ=255)
                                           gAAGCACTGGACAAACTCTGGCTACTGGAATCACGTAAGAGATCGNANGAGCACACGTCTTACCGGCACACANGGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGc                                                                                                         >  1:247623/1‑150 (MQ=255)
                                            aaGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCa                                                                                                        >  2:1204589/1‑150 (MQ=255)
                                              gCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAAt                                                                                                      <  1:185250/150‑1 (MQ=255)
                                              gCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAAt                                                                                                      <  2:1377291/150‑1 (MQ=255)
                                                 cTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGAc                                                                                                   >  2:1304763/1‑150 (MQ=255)
                                                       aaaCTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAg                                                                                             >  1:1041614/1‑150 (MQ=255)
                                                        aaCTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAgg                                                                                            >  1:1172072/1‑150 (MQ=255)
                                                                 tACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCCGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATcc                                                                                   >  2:551494/1‑150 (MQ=255)
                                                                 tACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATcc                                                                                   >  2:1318043/1‑150 (MQ=255)
                                                                   gatctggccGGTAAGCACCAAACGGAGCGGGAGGCTTACCGTCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTg                                                                                 <  1:1301829/143‑1 (MQ=255)
                                                                    tGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGCGGCCTGGAGCAATGACCTGCAGGATCACATCCTgg                                                                                >  1:226253/1‑150 (MQ=255)
                                                                      gAGTCCGGTAAGCACCAAGCGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAGCCCAGGCGAACGCGCTGCGCGCCTCCGGCGTGTAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGTCATCCTgcag                                                                              <  1:534810/150‑4 (MQ=255)
                                                                         tCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGAAGACCGAGGAGGCGGGGAGCAAGTTCCTGCAGGATGACATCCTgaagacc                                                                           >  2:1301829/1‑144 (MQ=255)
                                                                            ggTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGaa                                                                              <  1:193167/144‑1 (MQ=255)
                                                                            ggTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGaa                                                                              >  2:193167/1‑144 (MQ=255)
                                                                               aaGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATg                                                                     <  1:851918/150‑1 (MQ=255)
                                                                                     ccAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGAt                                                                >  2:874936/1‑150 (MQ=255)
                                                                                          cGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGAc                                                           <  1:874936/150‑1 (MQ=255)
                                                                                              gCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGt                                                                                                                                                <  1:293730/61‑1 (MQ=255)
                                                                                              gCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGt                                                                                                                                                >  2:293730/1‑61 (MQ=255)
                                                                                               cGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGAc                                                      <  2:1041614/150‑1 (MQ=255)
                                                                                                     gCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACctgctg                                                <  2:846928/150‑1 (MQ=255)
                                                                                                       ttACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACg                                                                          >  2:719760/1‑122 (MQ=255)
                                                                                                       ttACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACg                                                                          <  1:719760/122‑1 (MQ=255)
                                                                                                       ttACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTgctgct                                              >  1:598663/1‑150 (MQ=255)
                                                                                                                   tCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTc                                    >  2:119466/1‑148 (MQ=255)
                                                                                                                   tCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTc                                    <  1:119466/148‑1 (MQ=255)
                                                                                                                         gcaACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGa                            <  1:1304763/150‑1 (MQ=255)
                                                                                                                           aaCAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCCCAAGCAGGTCGAGCATGAGc                          <  1:1204589/150‑1 (MQ=255)
                                                                                                                               gCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCAt                              <  1:330882/142‑1 (MQ=255)
                                                                                                                               gCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCAt                              >  2:330882/1‑142 (MQ=255)
                                                                                                                                cTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCcgcg                     >  2:1101833/1‑150 (MQ=255)
                                                                                                                                 tGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAg                                       <  1:366613/131‑1 (MQ=255)
                                                                                                                                 tGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAg                                       >  2:366613/1‑131 (MQ=255)
                                                                                                                                  acgccacctcggtcgtcacCTGCACGCCGGAGGCACGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCgcgc                    <  2:923226‑M1/130‑1 (MQ=255)
                                                                                                                                  acgccacctcggtcgtcacCTGCACGCCGGAGGCACGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCgcgc                    >  1:923226‑M1/20‑149 (MQ=255)
                                                                                                                                   gAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGCCCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCGCGCTc                  >  1:837849/1‑150 (MQ=255)
                                                                                                                                    aaaCCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCGCGCTCa                 >  2:1396345/1‑150 (MQ=255)
                                                                                                                                     ccacctcggtcgtcacCTGCACGCCGGAGGCACGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCGCGCTCaa                >  1:305929‑M1/17‑150 (MQ=255)
                                                                                                                                       cccAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCGCGCTCAAgc              >  1:1103730/1‑150 (MQ=255)
                                                                                                                                        ccAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGgag                                                                  <  2:541677/97‑1 (MQ=255)
                                                                                                                                        ccAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGgag                                                                  >  1:541677/1‑97 (MQ=255)
                                                                                                                                             cGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCGCGCTTGAgcgcgggc        <  1:551494/150‑4 (MQ=255)
                                                                                                                                               aaCGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGAACTGCTGCTCAAGCAAGTCGCGCATGAGCCCGCGCTCAAGCGCGCcttc      <  1:1101833/150‑1 (MQ=255)
                                                                                                                                                aCGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGa                                                            >  2:57706/1‑95 (MQ=255)
                                                                                                                                                aCGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGa                                                            <  1:57706/95‑1 (MQ=255)
                                                                                                                                                   cgcTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCGCGCTCAAGCGCGCCTTCTTCa  >  1:138401/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
GGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCGGGAGGCTTACCGGCACACTCAGCAGCAACAGCTGGAAACCCAGGCGAACGCGCTGCGTGCCTCCGGCGTGCAGGTGACGACCGAGGTGGCGTGGAGCAATGACCTGCAGGATGACATCCTGGAACACGTCATGGAGATGCGACCGGACCTGCTGCTCAAGCAGGTCGAGCATGAGCCCGCGCTCAAGCGCGCCTTCTTCA  >  NC_002947/3673076‑3673371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.