New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3920914 =	48 (0.910)	4 (0.080)	4/240	NT	7.4%	coding (896/1689 nt)	acs	acyl‑CoA synthetase
	?	NC_002947	3920968 =	53 (1.030)					coding (842/1689 nt)	acs	acyl‑CoA synthetase

ATCTGCACTTCGGCCATGTGCATCTCGCCAATCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGACCATGCCGAAGCAGTGGTACAGCGGC  >  NC_002947/3920767‑3921063                                                                                                                                                    |                                                                                                                                                      ggtcggtgaaagcctgggccttaccgagcacgatcggctggtggtgccggtgccgctgtaccactgcttcggcatggtcatggccaaccttggctgcatgacacacggcagcgcactgatttaccccagcgatgccttcgacccgctGGc                                                                                                                                                     <  1:462485‑M1/3‑1 (MQ=255)         ttCGGCCATGTGCATCTCGCCAATCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATa                                                                                                                                             >  1:1186036/1‑150 (MQ=255)             gCCATGTGCATCTCGCCAATCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAgc                                                                                                                                         <  1:283029/150‑1 (MQ=255)                    gCATCTCGCCAATCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTgg                                                                                                                                  >  1:567679/1‑150 (MQ=255)                      aTCTCGCCAATCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCt                                                                                                                                >  1:835248/1‑150 (MQ=255)                          gagcacgatcggctggtggtgccggtgccgctgtaccactgcttcggcatggtcatggccaaccttggctgcatgacacacggcagcgcactgatttaccccagcgatgccttcgacccgctGGCACGCCATACAGCGCAGTGGCttttt                                                                                                                            <  1:901718‑M1/28‑1 (MQ=255)                          cGCCAATCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCttttt                                                                                                                            <  2:205291/150‑1 (MQ=255)                               aTCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACCACTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTgc                                                                                                                       <  2:408930/150‑1 (MQ=255)                                tCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTgcg                                                                                                                      >  2:587784/1‑150 (MQ=255)                                  aCCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGcc                                                                                                                    >  2:424288/1‑150 (MQ=255)                                               ccTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCg                                                                                                       >  1:493943/1‑150 (MQ=255)                                                 tCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTg                                                                                                     >  2:1072491/1‑150 (MQ=255)                                                     ccgctgtaccactgcttcggcatggtcatggccaaccttggctgcatgacacacggcagcgcactgatttaccccagcgatgccttcgacccgctGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCa                                                                                                 >  2:901718‑M1/96‑150 (MQ=255)                                                        ggCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGc                                                                                                                                                 >  2:170343/1‑99 (MQ=255)                                                        ggCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGc                                                                                                                                                 <  1:170343/99‑1 (MQ=255)                                                         gCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGCCACGTCGCCTTCCACACGCTGTGGATGGTCCATTTCTGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCgg                                                                                             <  2:518510/150‑1 (MQ=255)                                                          cAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCggg                                                                                            <  2:493943/150‑1 (MQ=255)                                                            ggTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGtg                                                                                          >  2:1391721/1‑149 (MQ=255)                                                             gTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTgc                                                                                                               <  2:1346754/128‑1 (MQ=255)                                                             gTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTgc                                                                                                               >  1:1346754/1‑128 (MQ=255)                                                               cGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGaa                                                                                       <  2:567679/150‑1 (MQ=255)                                                               cGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGaa                                                                                       <  1:1072491/150‑1 (MQ=255)                                                                gCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCCGAGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTCTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAg                                                                                      <  1:1360102/150‑1 (MQ=255)                                                                   ccGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGTTCGAAGGCa                                                                                   <  2:1186036/150‑1 (MQ=255)                                                                      gCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTg                                                                                                                                   <  1:509717/99‑1 (MQ=255)                                                                      gCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTg                                                                                                                                   >  2:509717/1‑99 (MQ=255)                                                                           gATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTggg                                                                           <  1:424288/150‑1 (MQ=255)                                                                              tcatggccaaccttggctgcatgacacacggcagcgcactgatttaccccagcgatgccttcgacccgctGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGt                                                                                           >  1:235996‑M1/71‑131 (MQ=255)                                                                              tcatggccaaccttggctgcatgacacacggcagcgcactgatttaccccagcgatgccttcgacccgctGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGt                                                                                           <  2:235996‑M1/61‑1 (MQ=255)                                                                                 ggTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCTTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAAt                                                                     <  1:1044776/150‑1 (MQ=255)                                                                                                 aGGTCGAATTCATGGTCCGGTGGATGGTCCAGTTCGGCAATGAACATGGTCGCGACCATCGTCACTGACTTCCCGCGTGCCTGCGCCACTTCGCGCAGCGTGACCAGCGGGTCGACGTCATCGCTTGGGTAAATCAGTGCGCTGCCgtgt                                                     <  1:1391721/150‑1 (MQ=255)                                                                                                 aGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCgtgt                                                     <  1:587784/150‑1 (MQ=255)                                                                                                   gTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAg                                                                                      <  1:769711/115‑1 (MQ=255)                                                                                                   gTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAg                                                                                      >  2:769711/1‑115 (MQ=255)                                                                                                      gAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCAt                                                <  2:465653/150‑1 (MQ=255)                                                                                                      gAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCAt                                                >  1:1191154/1‑150 (MQ=255)                                                                                                         ttCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGaa                                                                                       <  1:1365188/108‑1 (MQ=255)                                                                                                         ttCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGaa                                                                                       >  2:1365188/1‑108 (MQ=255)                                                                                                          tCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAg                                            <  2:148066/150‑1 (MQ=255)                                                                                                            accacGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCAt                                                <  2:230413/144‑1 (MQ=255)                                                                                                            accacGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCAt                                                >  1:230413/1‑144 (MQ=255)                                                                                                            accacGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGcc                                          >  1:488217/1‑150 (MQ=255)                                                                                                               tcGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCGGGGGTAAATCAGTGCGCTGCCGTGTGTCAGGCAGCCAAg                                       >  2:453858/2‑150 (MQ=255)                                                                                                                   tgtgGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTgg                                                                            >  1:1419926/1‑109 (MQ=255)                                                                                                                   tgtgGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTgg                                                                            <  2:1419926/109‑1 (MQ=255)                                                                                                                    gtgGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTgg                                  >  1:357675/1‑150 (MQ=255)                                                                                                                           gTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGAc                           >  1:496672/1‑150 (MQ=255)                                                                                                                           gTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGAc                           <  2:488217/150‑1 (MQ=255)                                                                                                                                       aaTGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGACCATGCCGAAGCa               >  1:1369924/1‑150 (MQ=255)                                                                                                                                         tGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTggg                                                                           >  2:355346/1‑88 (MQ=255)                                                                                                                                         tGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTggg                                                                           <  1:355346/88‑1 (MQ=255)                                                                                                                                         tGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGACCATGCCGAAGCAGt             <  2:1191154/150‑1 (MQ=255)                                                                                                                                           aaCATGGTCGGCACGCCATACAGCGCAGTGGCGTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGACCATGCCGAAGCAGTgg           >  2:379121/1‑150 (MQ=255)                                                                                                                                                 gTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGACCATGCCGAAGCAGTGGTACAGc     <  2:496672/150‑1 (MQ=255)                                                                                                                                                 gTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGACCATGCCGAAGCAGTGGTACAGc     <  2:999961/150‑1 (MQ=255)                                                                                                                                                    GGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGACCATGCCGAAGCAGTGGTACAGCGGc  <  1:1132220‑M1/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      ATCTGCACTTCGGCCATGTGCATCTCGCCAATCACCCGGCGCATCACCTCGATCGGGCAGGTCGCACCGGCCATGATCCCGGTGCGCAGGCTCGACAGGTCGAATTCACCACGCTGTGGATGGTCCAGTTCGGCAATGAACATGGTCGGCACGCCATACAGCGCAGTGGCTTTTTCCTGCGCCACTGCGCGCAGCGTGGCCAGCGGGTCGAAGGCATCGCTGGGGTAAATCAGTGCGCTGCCGTGTGTCATGCAGCCAAGGTTGGCCATGACCATGCCGAAGCAGTGGTACAGCGGC  >  NC_002947/3920767‑3921063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.