New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5091474 =	54 (1.030)	4 (0.080)	4/238	NT	7.2%	coding (879/1221 nt)	astC	acetylornithine aminotransferase
	?	NC_002947	5091498 =	51 (1.000)					coding (855/1221 nt)	astC	acetylornithine aminotransferase

CAGCAGCAAGCCGACACCACGCACCTGGCTGAACAGGTTGTACTGCTGGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCACTGGTCAGAATGTCCGG  >  NC_002947/5091327‑5091611                                                                                                                                                    |                                                                                                                                           tcgctgtatgcctaccagcactacggcgtgatcccggacattctgaccagtgccaagagcctgggcggcggtttcccgattggcgccatgctgaccaccaccgagctggccaagcacctggccgttggcacccacggcaccacctatGgc                                                                                                                                          >  2:416945‑M1/148‑150 (MQ=255)        aaGCCGACACCACGCACCTGGCTGAACAGGTTGTACTGCTGGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAAccc                                                                                                                                  >  1:470731/1‑150 (MQ=255)                   acGCACCTGGCTGAACAGGTTGTACTGCTGGCCGATCTGTTCCAGGCGGCTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTgcc                                                                                                                       >  1:180523/1‑150 (MQ=255)                         cTGGCTGAACAGGTTGTACTGCTGGCCGATCTGTTCCAGGCGGGTTGTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATa                                                                                                                 >  1:331315/1‑150 (MQ=255)                          tGGCTGAACAGGTTGTACTGCTGGCCGATCTGTTCCCGCATGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAg                                                                                                                <  1:1008194/150‑1 (MQ=255)                          tGGCTGAACAGGTTGTACTGCTGGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAg                                                                                                                <  2:113584/150‑1 (MQ=255)                            gCTGAACAGGTTGTACTGCTGGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCNAGCACCNCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCTGCCATAggt                                                                                                              <  1:823471/150‑1 (MQ=255)                                     gTTGTACTGCTGGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTg                                                                                                     >  2:1309037/1‑150 (MQ=255)                                     gTTGTACTGCTGGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTg                                                                                                     <  1:1235000/150‑1 (MQ=255)                                      ttGTACTGCTGGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTgg                                                                                                    <  1:1171337/150‑1 (MQ=255)                                         tagtgcttGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTATCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTg                                                                                                 >  2:416038/4‑150 (MQ=255)                                            tgctgGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCa                                                                                              >  2:1095530/1‑150 (MQ=255)                                               tgGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACg                                                                                           >  2:744218/1‑150 (MQ=255)                                                           tCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTg                                                                               <  2:1410564/150‑1 (MQ=255)                                                           tCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGACTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTg                                                                               <  1:416038/150‑1 (MQ=255)                                                                  gggTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCt                                                                        >  2:505175/1‑150 (MQ=255)                                                                        tGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGTTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCggtgg                                                                  <  1:859039/150‑1 (MQ=255)                                                                          aaGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAg                                                                                                                <  1:304402/102‑1 (MQ=255)                                                                          aaGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAg                                                                                                                >  2:304402/1‑102 (MQ=255)                                                                          aaGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCggtggtg                                                                <  2:470731/150‑1 (MQ=255)                                                                            gcgcTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCggtggtggt                                                              >  2:136427/1‑150 (MQ=255)                                                                             cgcTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTc                                                             <  1:139395/150‑1 (MQ=255)                                                                               cTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGt                                                                                                                           <  2:724923/86‑1 (MQ=255)                                                                               cTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGt                                                                                                                           >  1:724923/1‑86 (MQ=255)                                                                                tCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAggtgg                                                                                                            >  1:1104217/1‑100 (MQ=255)                                                                                tCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAggtgg                                                                                                            <  2:1104217/100‑1 (MQ=255)                                                                                tCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGt                                                                                                  <  2:439162/110‑1 (MQ=255)                                                                                tCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGt                                                                                                  >  1:439162/1‑110 (MQ=255)                                                                                     cTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCCGCATGgc                                                     >  2:478610/1‑150 (MQ=255)                                                                                        aGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTg                                                                               >  2:1209374/1‑121 (MQ=255)                                                                                        aGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTg                                                                               <  1:1209374/121‑1 (MQ=255)                                                                                           cTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAAt                                               >  1:893104/1‑150 (MQ=255)                                                                                              gATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCgg                                            >  2:723040/1‑150 (MQ=255)                                                                                              gATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCgg                                            <  2:1413900/150‑1 (MQ=255)                                                                                               aTACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAg                                                                                                                >  1:460667/1‑81 (MQ=255)                                                                                               aTACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAg                                                                                                                <  2:460667/81‑1 (MQ=255)                                                                                                 aCCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAggtg                                                                                                             <  2:172595/82‑1 (MQ=255)                                                                                                 aCCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAggtg                                                                                                             >  1:172595/1‑82 (MQ=255)                                                                                                     gCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAAccg                                     >  1:946649/1‑150 (MQ=255)                                                                                                        aGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAAccgccg                                  >  1:9269/1‑150 (MQ=255)                                                                                                           gTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGccc                               >  2:1248913/1‑150 (MQ=255)                                                                                                               caagcacctggccgttggcacccacggcaccacctatGGCG‑CAACCCAGCGGGTTGCCGCCATAg                                                                                                                >  1:89754‑M1/38‑65 (MQ=255)                                                                                                               caagcacctggccgttggcacccacggcaccacctatGGCG‑CAACCCAGCGGGTTGCCGCCATAg                                                                                                                <  2:89754‑M1/28‑1 (MQ=255)                                                                                                                 ggggTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACcgccgc                                 <  2:1328595/142‑1 (MQ=255)                                                                                                                 ggggTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACcgccgc                                 >  1:1328595/1‑142 (MQ=255)                                                                                                                 ggggTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGctc                         <  2:946649/150‑1 (MQ=255)                                                                                                                    gtgtTGACCACGTCCAGCACCGAGCGGGCCACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTg                      <  2:180523/150‑1 (MQ=255)                                                                                                                          aCCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCACTg                >  2:136587/1‑150 (MQ=255)                                                                                                                            cACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGgtggtg                                                                                                          <  2:454733/58‑1 (MQ=255)                                                                                                                            cACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGgtggtg                                                                                                          >  1:454733/1‑58 (MQ=255)                                                                                                                            cACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCACTGGt              >  2:1126527/1‑150 (MQ=255)                                                                                                                               ggcacccacggcaccacctatGGCGGCAACCCGCTGGGTTGC‑GCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCAc                  <  2:541719‑M1/122‑1 (MQ=255)                                                                                                                               ggcacccacggcaccacctatGGCGGCAACCCGCTGGGTTGC‑GCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCAc                  >  1:541719‑M1/22‑143 (MQ=255)                                                                                                                               gTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAAccgc                                    <  2:593740/125‑1 (MQ=255)                                                                                                                               gTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAAccgc                                    >  1:593740/1‑125 (MQ=255)                                                                                                                                      aCCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAg                                                                                      >  2:156287/1‑68 (MQ=255)                                                                                                                                      aCCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAg                                                                                      <  1:156287/68‑1 (MQ=255)                                                                                                                                        cgcgCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCACTGGTCAGAATGTCCgg  <  2:9269/150‑1 (MQ=255)                                                                                                                                        cgcgCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAATATCGCGCCAACTCCGCCACCGCCGCCTAGGCTCTTGGCACTGGTCAGAATGTCCgg  <  1:744218/150‑1 (MQ=255)                                                                                                                                                 aaCGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCACTGGTCAGAATGTCCgg  >  2:1012221/1‑141 (MQ=255)                                                                                                                                                 aaCGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCACTGGTCAGAATGTCCgg  <  1:1012221/141‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                           CAGCAGCAAGCCGACACCACGCACCTGGCTGAACAGGTTGTACTGCTGGCCGATCTGTTCCAGGCGGGTTTTGAAGCGCTCGTGCTTAGCCTTGATACCGGCCAGGGTTTCCGGGGTGTTGACCACGTCCAGCACCGCGCAGGCAACGGCG‑CAACCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGGGTGCCAACGGCCAGGTGCTTGGCCAGCTCGGTGGTGGTCAGCATGGCGCCAATCGGGAAACCGCCGCCCAGGCTCTTGGCACTGGTCAGAATGTCCGG  >  NC_002947/5091327‑5091611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.