New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 551331540 (0.760)6 (0.150) 5/194 NT 16.1% intergenic (+45/‑109) urtD/urtE ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
?NC_002947 = 5513371 31 (0.750)intergenic (+101/‑53) urtD/urtE ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

GCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGG  >  NC_002947/5513166‑5513461
                                                                                                                                                     |                                                                                                                                                  
agcaggcaggtcacttcgccgatcttggcttcgaaggataggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTaa                                                                                                                                                    <  2:1078153‑M1/26‑1 (MQ=255)
 ccGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAc                                                                                                                                                   >  1:895748/1‑150 (MQ=255)
  cGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAcc                                                                                                                                                  >  1:661071/1‑150 (MQ=255)
  cGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGAGTGTTGTGGCCTCTTCGCGGGTAAcc                                                                                                                                                  >  2:467943/1‑150 (MQ=255)
   gACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAccc                                                                                                                                                 <  1:1290548/150‑1 (MQ=255)
   gACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAccc                                                                                                                                                 >  1:1063925/1‑150 (MQ=255)
                   tgcACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGAATCCGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGc                                                                                                                                 >  1:1085199/1‑150 (MQ=255)
                      aCCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCAGGTAACCCCGTTCCTACAGTGAGCGTa                                                                                                                              >  1:836538/1‑150 (MQ=255)
                        cAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgc                                                                                                                            >  2:522052‑M1/1‑126 (MQ=255)
                         aGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAATGGGCGTAATg                                                                                                                           >  1:1198215/1‑150 (MQ=255)
                            cttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCa                                                                                                                        <  2:489879‑M1/54‑1 (MQ=255)
                                  tgCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTaa                                                                                                                             <  2:530314/139‑1 (MQ=255)
                                  tgCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGAACGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTaa                                                                                                                             >  1:530314/1‑139 (MQ=255)
                                         ggAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTccc                                                                                                           <  1:46427/150‑1 (MQ=255)
                                           cgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgcGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgt                                                                                                         <  1:154000‑M1/69‑1 (MQ=255)
                                           aaGGCTCGCTGGAGCAGGTGCAGGCATATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgt                                                                                                         >  1:692279/1‑150 (MQ=255)
                                            aGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgtc                                                                                                        <  1:1244193/150‑1 (MQ=255)
                                            aGGCTCACTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCTGCTGACAGGCTTTTAATTTCTGGCGTCTGTGCCGGCCGCTTCGTGTGTAATCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgtc                                                                                                        <  2:1230208/150‑1 (MQ=255)
                                               cTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTa                                                                                                     <  2:895748/150‑1 (MQ=255)
                                               cTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTa                                                                                                     <  1:1059290/150‑1 (MQ=255)
                                                tCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGGGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTAACACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAg                                                                                                    >  1:1142923/1‑150 (MQ=255)
                                                tCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgtcgtcg                                                                                                    >  2:1033898/1‑148 (MQ=255)
                                                tCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAg                                                                                                    >  2:1288810/1‑150 (MQ=255)
                                                tCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAg                                                                                                    >  2:1258439/1‑150 (MQ=255)
                                                      gAGCAGGTGCAGGCATATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATATGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCgg                                                                                              <  2:692279/150‑1 (MQ=255)
                                                      gAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCgg                                                                                              <  1:467943/150‑1 (MQ=255)
                                                      gAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAATGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCgg                                                                                              <  2:1198215/150‑1 (MQ=255)
                                                       aGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggg                                                                                             <  1:522052‑M1/150‑56 (MQ=255)
                                                        gCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggg                                                                                             <  1:400703‑M1/149‑56 (MQ=255)
                                                        gCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggg                                                                                             >  2:400703‑M1/1‑94 (MQ=255)
                                                          tgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgcGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGttt                                                                                          >  2:154000‑M1/67‑150 (MQ=255)
                                                            gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttac                                                                                        >  2:68341‑M1/1‑90 (MQ=255)
                                                            gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttac                                                                                        <  1:68341‑M1/150‑61 (MQ=255)
                                                            gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttac                                                                                        <  1:734713‑M2/150‑5 (MQ=255)
                                                            gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGGTCCTACAGTGGGCGGAGTGGCGTGGGGGGGTTCCCGTCGGAGGGGCGGGTttac                                                                                        <  2:1367019‑M2/150‑5 (MQ=255)
                                                              gcaggcagATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTAACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGNGGGCGTNATGCCATGGGGCNGTTCCCGTCGTAGGAGCGGGTttaccc                                                                                      >  1:1288810‑M2/1‑144 (MQ=255)
                                                                cgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCcgc                                                                                    <  2:1060626‑M1/90‑1 (MQ=255)
                                                                  gcagATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGTCCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcga                                                                                  <  2:821236‑M2/150‑11 (MQ=255)
                                                                  gcagATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGGAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGAAGGAGCGGGGttacccggga                                                                                  <  2:1393599‑M2/150‑11 (MQ=255)
                                                                   cagATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaa                                                                                 >  1:110055‑M2/1‑139 (MQ=255)
                                                                   agtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGaa                                                                                 >  1:489879‑M1/58‑150 (MQ=255)
                                                                     gATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAc                                                                                                                                                   >  2:392357/1‑82 (MQ=255)
                                                                     gATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAc                                                                                                                                                   <  1:392357/82‑1 (MQ=255)
                                                                     gATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaaga                                                                               >  1:926315‑M2/1‑137 (MQ=255)
                                                                         aGCGGGTGGTCGAGGTGTATCTGGGCTGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtt                                                                                          >  1:1073187‑M2/1‑133 (MQ=255)
                                                                         aGCGGGTGGTCGAGGTGTATCTGGGCTGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtt                                                                                          <  2:1073187‑M2/135‑3 (MQ=255)
                                                                          gtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgtcg                                                                                                       >  2:1278332‑M1/51‑121 (MQ=255)
                                                                          gtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgtcg                                                                                                       <  1:1278332‑M1/71‑1 (MQ=255)
                                                                             ggtggtCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggca                                                                       >  1:788669‑M2/1‑129 (MQ=255)
                                                                             ggtggtCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGACGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGAGTAATGCCATGGGGCGGTTCCAGTCGTAGGAGCGGTTttacccgctaagaggccggcc                                                                       <  2:412591‑M2/150‑22 (MQ=255)
                                                                                ggtCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacag                                                                    >  1:648356‑M2/1‑126 (MQ=255)
                                                                                  tgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacaggc                                                                  >  1:1060626‑M1/43‑150 (MQ=255)
                                                                                    gAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGATTACCCGCGAAGAGGCCggcacaggcac                                                                >  1:843888/1‑150 (MQ=255)
                                                                                     aGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacaggcaca                                                               <  1:1258439/150‑1 (MQ=255)
                                                                                     aGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacaggcaca                                                               <  2:1177203/150‑1 (MQ=255)
                                                                                      ggTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGgcacaggcacag                                                              <  1:617379/150‑1 (MQ=255)
                                                                                       gtgtATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCa                                                            >  2:302152/1‑150 (MQ=255)
                                                                                          tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATc                                                          <  1:1187737/150‑1 (MQ=255)
                                                                                              tGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTCACCCCGTTCCTACAGTGCGCGTAATGCCATGGGGCGGTTCCCGCCGGAGCAGTGGGGTTACCCGCGGAGATGCCGGCACGGGCACAGCACCCCtt                                                      >  1:589875/1‑150 (MQ=255)
                                                                                                 gCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCa                                                   <  1:1014463/150‑1 (MQ=255)
                                                                                                  ccGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAg                                                  <  2:1286724/150‑1 (MQ=255)
                                                                                                  ccGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAg                                                  >  2:1131300/1‑150 (MQ=255)
                                                                                                   cGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGGAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAgg                                                 >  1:331648/1‑150 (MQ=255)
                                                                                                    gagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGTCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacaggca                                                                 >  1:1214300‑M1/25‑133 (MQ=255)
                                                                                                    gagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGTCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacaggca                                                                 <  2:1214300‑M1/109‑1 (MQ=255)
                                                                                                    gCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGa                                                >  1:477523/1‑150 (MQ=255)
                                                                                                       gACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAActc                                            <  1:302152/150‑1 (MQ=255)
                                                                                                          cGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACtctc                                          <  2:1063925/150‑1 (MQ=255)
                                                                                                          cGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACtctc                                          <  1:943112/150‑1 (MQ=255)
                                                                                                          cGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACtctc                                          <  1:821236/150‑1 (MQ=255)
                                                                                                          cGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGAACAGCATCCCTTTCAGGAACtctc                                          >  1:725086/1‑150 (MQ=255)
                                                                                                           ggctttGAATTTTCGGCGCGTGTGCCGGCCGTTTCGCGGGTGACCCCGTTCCTACAGTGGGCGTGATGCCATGGGGGGGTTCCCGTCGTAGGAGCGGGTTTGCCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTca                                         <  1:133771/147‑1 (MQ=38)
                                                                                                              tttGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAAAGAATCCTTTTCAGGAACTCTCACAt                                      >  2:1210601/1‑150 (MQ=255)
                                                                                                               ttGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCGGTTCCGACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATg                                     >  1:1135328/1‑150 (MQ=255)
                                                                                                                        tGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATc                            <  2:734713/150‑1 (MQ=255)
                                                                                                                          gcgcCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGa                          <  1:134110/150‑1 (MQ=255)
                                                                                                                              cTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgacc                      >  1:648356‑M1/1‑24 (MQ=255)
                                                                                                                                 tgCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacc                   >  1:788669‑M1/1‑21 (MQ=255)
                                                                                                                                 ggcCGGCCTCTTAGCGGGTAAaaccgctcctacgactggaaccgccccatggcattactcccactgtaggaacggggttacccgcgaagaggccgtcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacc                   <  2:412591‑M1/149‑130 (MQ=255)
                                                                                                                                      gCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggg                                                                                             <  1:581799‑M1/71‑56 (MQ=255)
                                                                                                                                      gCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggg                                                                                             >  2:581799‑M1/1‑16 (MQ=255)
                                                                                                                                       CCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGa                              <  1:890306‑M1/133‑1 (MQ=255)
                                                                                                                                       CCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGa                              >  2:890306‑M1/1‑133 (MQ=255)
                                                                                                                                         tctTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatc           >  1:926315‑M1/1‑13 (MQ=255)
                                                                                                                                         TCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACAt                                      <  2:1201667‑M1/123‑1 (MQ=255)
                                                                                                                                         TCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACAt                                      >  1:1201667‑M1/1‑123 (MQ=255)
                                                                                                                                         TCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGta           >  2:1246961‑M1/1‑150 (MQ=255)
                                                                                                                                           ttCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctg         >  1:110055‑M1/1‑11 (MQ=255)
                                                                                                                                           TTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATgggg                                                                                                                   <  1:1416787‑M1/44‑1 (MQ=255)
                                                                                                                                           TTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATgggg                                                                                                                   >  2:1416787‑M1/1‑44 (MQ=255)
                                                                                                                                            tcccgggtAAccccgctccttcgacgggaaccgccccatggcattacgcccactgtaggaacggggttccccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgc        <  2:1393599‑M1/147‑141 (MQ=255)
                                                                                                                                            tCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggacagcggcccagatacacctcgaccacccgctcatctgc        <  2:821236‑M1/150‑141 (MQ=255)
                                                                                                                                              GCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcg      <  2:395044‑M1/150‑1 (MQ=255)
                                                                                                                                                gggTAAacccgctcctacgacgggaacngccccatggcatnacgcccnctgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggttagcggcccagatacacctcgaccacccgctcatctgcctgc    >  1:1288810‑M1/1‑6 (MQ=255)
                                                                                                                                                  gTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcac  <  1:734713‑M1/150‑147 (MQ=255)
                                                                                                                                                  gTAAacccgcccctccgacgggaacccccccacgccactccgcccactgtaggaccggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcac  <  2:1367019‑M1/150‑147 (MQ=255)
                                                                                                                                                  gTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcac  <  1:68341‑M2/150‑91 (MQ=255)
                                                                                                                                                  gTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcac  >  2:68341‑M2/1‑60 (MQ=255)
                                                                                                                                                    aaacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcagcccagatacacctcgaccacccgct               >  1:1073187‑M1/1‑2 (MQ=255)
                                                                                                                                                    aaacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcagcccagatacacctcgaccacccgct               <  2:1073187‑M1/135‑134 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
GCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGG  >  NC_002947/5513166‑5513461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.