New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419584	14 (0.270)	6 (0.150)	6/182	NT	36.0%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419614	11 (0.280)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

TAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCT  >  NC_002947/1419465‑1419760                                                                                                                                                       |                                                                                                                                                   tAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGAc                                                                                                                                                    <  1:1066310/150‑1 (MQ=255) tAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGAc                                                                                                                                                    >  2:1280629/1‑150 (MQ=255)     aGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctg                                                                                                                                                >  1:518576‑M2/1‑146 (MQ=255)        ggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTgg                                                                                                                                             >  1:596223‑M1/82‑150 (MQ=255)        ggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTgg                                                                                                                                             >  2:1370664‑M1/82‑150 (MQ=255)          gTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgtga                                                                                                                                           >  2:1063694‑M2/1‑141 (MQ=255)          cttgtcgattcggcgttgctgcagttgcagatgcaggcgcaattacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGa                                                                                                                                           >  2:1084343‑M1/80‑150 (MQ=255)             ttGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgt                                                                                                                                               >  1:912264‑M2/1‑138 (MQ=255)             ttGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgt                                                                                                                                               <  2:912264‑M2/143‑6 (MQ=255)              tGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgg                                                                                                                                       >  1:987585‑M2/1‑137 (MQ=255)                 cGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTCGTTGCCTGGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACCGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcg                                                                                                                                    <  1:330159‑M2/150‑17 (MQ=255)                  gACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgt                                                                                                                                   <  2:855972‑M2/150‑18 (MQ=255)                    cTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgc                                                                                                                                 >  1:1280629‑M2/1‑131 (MQ=255)                              gcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCgg                                                                                                                                       <  1:1152742‑M1/75‑1 (MQ=255)                              gcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCgg                                                                                                                                       >  2:1152742‑M1/60‑134 (MQ=255)                                                gggCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcac                                                                                                                                   <  1:1056420‑M2/120‑18 (MQ=255)                                                gggCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcac                                                                                                                                   >  2:1056420‑M2/1‑103 (MQ=255)                                                 ggCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCGCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCaa                                                                                                    <  1:333765/150‑1 (MQ=255)                                                    aTTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaa                                                                                                                          >  2:878918‑M2/1‑99 (MQ=255)                                                    aTTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaa                                                                                                                          <  1:878918‑M2/125‑27 (MQ=255)                                                        ttttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGC‑AGTCGGATTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGCACTGAAGTGCCAATGCACGGggtgg                                                                                             >  1:88290/1‑149 (MQ=25)                                                          ttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCCTCGCGGCCACTCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAgg                                                                                           <  1:866067/150‑1 (MQ=255)                                                                  cTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaag                                                                                                                         >  2:1125203‑M2/1‑85 (MQ=255)                                                                  cTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaag                                                                                                                         <  1:1125203‑M2/112‑28 (MQ=255)                                                                   cacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCtgt                                                                                                                                               <  1:1012056‑M1/67‑1 (MQ=255)                                                                   cacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCtgt                                                                                                                                               >  2:1012056‑M1/23‑89 (MQ=255)                                                                              ttGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAcc                                                                       <  1:855972/150‑1 (MQ=255)                                                                                        tGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaa                                                                   <  2:432401‑M2/144‑82 (MQ=255)                                                                                        tGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaa                                                                   >  1:432401‑M2/1‑63 (MQ=255)                                                                                           CCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAg                                                                                                   >  2:928479‑M1/1‑109 (MQ=255)                                                                                           CCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAg                                                                                                   <  1:928479‑M1/109‑1 (MQ=255)                                                                                             TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCa                                                        <  1:221521‑M1/150‑1 (MQ=255)                                                                                               TTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATc                                                      <  1:899911‑M1/150‑1 (MQ=255)                                                                                                 CGCGGGCCCGCCTGCTCACCCCGGTATTTTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCaa                                                    >  2:330159‑M1/1‑150 (MQ=255)                                                                                                        ACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGAc                                             <  2:1213870‑M1/150‑1 (MQ=255)                                                                                                          GCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCCTCAACGCCGACTc                                           <  1:382340‑M1/150‑1 (MQ=255)                                                                                                              GCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAcc                                       <  1:803212‑M1/150‑1 (MQ=255)                                                                                                                  ccACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccag                                                                                             >  2:655525‑M2/1‑37 (MQ=255)                                                                                                                  ccACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccag                                                                                             <  1:655525‑M2/92‑56 (MQ=255)                                                                                                                  CCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgt                                                                                     >  2:87075‑M1/1‑100 (MQ=255)                                                                                                                  CCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTAtgt                                                                                     <  1:87075‑M1/100‑1 (MQ=255)                                                                                                                   CACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGtgtg                                                                                              <  1:139043‑M1/90‑1 (MQ=255)                                                                                                                   CACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGtgtg                                                                                              >  2:139043‑M1/1‑90 (MQ=255)                                                                                                                   CACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGccc                                  <  2:65044‑M1/150‑1 (MQ=255)                                                                                                                    acaGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaa                                        <  1:1141157‑M2/143‑109 (MQ=255)                                                                                                                    acaGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaa                                        >  2:1141157‑M2/1‑35 (MQ=255)                                                                                                                    ACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGcccc                                 <  2:181052‑M1/150‑1 (MQ=255)                                                                                                                    ACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGAGGAGGGGCGCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGcccc                                 <  1:748209‑M1/150‑1 (MQ=255)                                                                                                                         tACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTAc                            <  1:181052/150‑1 (MQ=255)                                                                                                                                cAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTcc                     >  2:765407/1‑150 (MQ=255)                                                                                                                                 aGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCaa                                                             <  2:11784/109‑1 (MQ=255)                                                                                                                                 aGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCaa                                                             >  1:11784/1‑109 (MQ=255)                                                                                                                                 aGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCa                    >  2:371825/1‑150 (MQ=255)                                                                                                                                  gTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCTCTTCCAt                   <  2:88290/150‑1 (MQ=255)                                                                                                                                      gTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCa               <  1:765407/150‑1 (MQ=255)                                                                                                                                                    tgACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCt  <  2:899911/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                   TAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGG‑CTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCT  >  NC_002947/1419465‑1419760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.