New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2431225	47 (0.890)	6 (0.120)	6/236	NT	12.4%	coding (775/1974 nt)	PP_2130	lytic transglycosylase
	?	NC_002947	= 2431246	40 (0.790)					coding (754/1974 nt)	PP_2130	lytic transglycosylase

GCGAGGGTCAGGCCGATTTCGCGGGCGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAGGGTGTTGGCCAGGCCGTAGTTGCGCGCCTG  >  NC_002947/2431098‑2431387                                                                                                                                                      |                                                                                                                                              gCGAGGGTCAGGCCGATTTCGCGGGCGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATg                                                                                                                                              >  2:1037379‑M2/1‑149 (MQ=255) gCGAGGGTCAGGCCGATTTCGCGGGAGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGCGCAGTGCCATGGC‑CCGCCCCCGATGCCGCCGTGCTAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATg                                                                                                                                              >  1:1316042‑M2/1‑149 (MQ=255)            gCCGATTTCGCGGGCGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGAc                                                                                                                                   >  1:586252/1‑150 (MQ=255)              cGATTTCGCGGGCGATTGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCg                                                                                                                                 <  2:154604/150‑1 (MQ=255)                 tttCGCGGGCGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGtt                                                                                                                                      >  1:176450/1‑142 (MQ=255)                 tttCGCGGGCGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGtt                                                                                                                                      <  2:176450/142‑1 (MQ=255)                 tttCGCGGGCGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCgggg                                                                                                                              <  2:277345/150‑1 (MQ=255)                         gCGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAgcgc                                                                                                                      <  2:230898/150‑1 (MQ=255)                                  aCTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTgg                                                                                                             <  1:21537/150‑1 (MQ=255)                                          gTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGTTGGTTGagcag                                                                                                     >  1:217600/1‑150 (MQ=255)                                             aCCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTc                                                                                                  >  1:336349/1‑150 (MQ=255)                                               ccGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAgcg                                                                                                                       <  2:451552/127‑1 (MQ=255)                                               ccGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAgcg                                                                                                                       >  1:451552/1‑127 (MQ=255)                                               ccGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCgg                                                                                                >  2:1214225/1‑150 (MQ=255)                                                         cATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTgcgc                                                                                      >  1:572207/1‑150 (MQ=255)                                                                        aTCGTCGAGCAGTGCCATGGC‑CCGCGCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATcagcag                                                                       <  2:683530/150‑1 (MQ=255)                                                                         tcgtcgAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGAc                                                                                   >  1:503195/1‑137 (MQ=255)                                                                         tcgtcgAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGAc                                                                                   <  2:503195/137‑1 (MQ=255)                                                                            tcgAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCCCGGGCTTCTGCGCGACGTCGATCAGCAGgcgc                                                                   >  1:604389/1‑150 (MQ=255)                                                                                    ggCCATGGCACTGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGtt                                                                                                           >  2:188193/2‑103 (MQ=255)                                                                                    ggCCATGGCACTGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGtt                                                                                                           <  1:188193/102‑1 (MQ=255)                                                                                       cATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGcc                                                        >  2:1340251/1‑150 (MQ=255)                                                                                           gC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCgg                                                                                                                                <  1:296660/74‑1 (MQ=255)                                                                                           gC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCgg                                                                                                                                >  2:296660/1‑74 (MQ=255)                                                                                              ctgCTCCTGGCTCTGCCGGTCAAGGCGACGAAGGCCGAGGCTGACCCCGTCGGACATGGCCTGGTTGACAGGGGTAGACCGCGAGGGCTTGGTTAGCAAGCCGGTCGTCTGGGCGACGACGATCACCGGGCGCCCCTGCGGACCGCggga                                                  >  2:161517/3‑149 (MQ=255)                                                                                              ccGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAgg                                                                      <  1:280945/130‑1 (MQ=255)                                                                                              ccGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAgg                                                                      >  2:280945/1‑130 (MQ=255)                                                                                              ccGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGggt                                                  >  2:996646/1‑150 (MQ=255)                                                                                               cGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGggtg                                                 <  1:996646/150‑1 (MQ=255)                                                                                                     gggTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAgcg                                                                                                                       <  2:1206280/74‑1 (MQ=255)                                                                                                     gggTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAgcg                                                                                                                       >  1:1206280/1‑74 (MQ=255)                                                                                                     gggTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAgg                                           <  2:336349/150‑1 (MQ=255)                                                                                                          cTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCGTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTGCTGCGCGACGTCGGTCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCACGGTCtg                                      <  2:491637/150‑2 (MQ=255)                                                                                                            gCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGa                                    >  1:310591/1‑150 (MQ=255)                                                                                                               gggCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCa                                 <  2:467014/150‑1 (MQ=255)                                                                                                                 gCCAGGCGACGAAGGCCGAGACTGATCACGTCGAACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAgg                               <  2:310591/150‑1 (MQ=255)                                                                                                                  ccAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAggg                              <  2:572207/150‑1 (MQ=255)                                                                                                                     ggCGACGAAGGCCGAGGCTGACCACGTCGGACATggccttcgtcgcctggcccggcagaacccggagcgggccatggcactgctcgacgattacgcccagcgcatgcacttctcgg                                                             >  2:1356344‑M2/1‑34 (MQ=255)                                                                                                                     ggCGACGAAGGCCGAGGCTGACCACGTCGGACATggccttcgtcgcctggcccggcagaacccggagcgggccatggcactgctcgacgattacgcccagcgcatgcacttctcgg                                                             <  1:1356344‑M2/116‑83 (MQ=255)                                                                                                                       ggacgaAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGGTGAGCTGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAGGGTGTTg                         <  1:169215/149‑1 (MQ=255)                                                                                                                        gacgaAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAGGGTGTTgg                        <  2:586252/150‑1 (MQ=255)                                                                                                                                ccGAGGCTGACCACGTCGGACATggccttcgtcgcctggcccggcagaacccggagcgggccatggcactgctcgacgattacgcccagcgcatgcacttctcg                                                              <  1:1031219‑M2/104‑82 (MQ=255)                                                                                                                                ccGAGGCTGACCACGTCGGACATggccttcgtcgcctggcccggcagaacccggagcgggccatggcactgctcgacgattacgcccagcgcatgcacttctcg                                                              >  2:1031219‑M2/1‑23 (MQ=255)                                                                                                                                ccGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAGGGTGTTGGCCAGGCCg                >  1:582532/1‑150 (MQ=255)                                                                                                                                 cGAGGCTGACCACGTCGGACATggccttcgtcgcctggcccggcagaacccggagcgggccatggcactgctcgacgattacgcccagcgcatgcacttctcgggtgacgaaaaagtggccatcgcccgcgaaatcggcctgaccctcgc               <  2:1178909‑M2/150‑129 (MQ=255)                                                                                                                                 cGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAGGGTGTTGGCCAGGCCGt               >  1:517458/1‑150 (MQ=255)                                                                                                                                     gCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAGGGTGTTGGCCAGGCCGTAGtt           <  1:1214225/150‑1 (MQ=255)                                                                                                                                          ccACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCtt                                      <  1:1219499/118‑1 (MQ=255)                                                                                                                                          ccACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCtt                                      >  2:1219499/1‑118 (MQ=255)                                                                                                                                              gTCGGACATggccttcgtcgcctggcccggcagaacccggagcgggccatggcactgctcgacgattacgcccagcgcatgcacttctcgggtgacgaaaaagtggccatcgcccgcgaaatcggcctgaccctcgcacgccgctacgac  >  1:1178909‑M2/1‑9 (MQ=255)                                                                                                                                                   aCATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAgg                               >  1:1180296/1‑116 (MQ=255)                                                                                                                                                   aCATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAgg                               <  2:1180296/116‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                              GCGAGGGTCAGGCCGATTTCGCGGGCGATGGCCACTTTTTCGTCACCCGAGAAGTGCATGCGCTGGGCGTAATCGTCGAGCAGTGCCATGGC‑CCGCTCCGGGTTCTGCCGGGCCAGGCGACGAAGGCCGAGGCTGACCACGTCGGACATGGCCTCGTTGACCGGGGTAAAGCGCGACGGCTGGTTGAGCAGCTCGGGCTTCTGCGCGACGTCGATCAGCAGGCGCCCCTGCGGGCCGAGGGTGGTCAGGGTCTTGACCAGGGTGTTGGCCAGGCCGTAGTTGCGCGCCTG  >  NC_002947/2431098‑2431387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.