New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5317948 =	60 (1.140)	3 (0.060)	3/240	NT	5.2%	coding (1474/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
	?	NC_002947	5317987 =	50 (0.980)					coding (1435/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase

AGGTCCTTCAGGCTGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCACGTCCTGATCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGG  >  NC_002947/5317845‑5318134                                                                                                                                                 |                                                                                                                                                    aGGTCCTTCAGGCTGGTGATGCGGATACCCACATGGCCATAGGCATCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCgttg                                                                                                                                              <  2:1272570/150‑1 (MQ=255)   gTCCTTCAGGCTGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCgttg                                                                                                                                              <  2:1173564/148‑1 (MQ=255)   gTCCTTCAGGCTGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCgttg                                                                                                                                              >  1:1173564/1‑148 (MQ=255)      cTTCAGGCTGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCGATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAg                                                                                                                                         >  1:1015919/1‑150 (MQ=255)      cTTCAGGCTGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAg                                                                                                                                         <  2:1252676/150‑1 (MQ=255)           ggCTGGTTATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGa                                                                                                                                    <  1:786999/150‑1 (MQ=255)           ggCTGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGa                                                                                                                                    <  1:166945/150‑1 (MQ=255)            gCTGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGAc                                                                                                                                   >  1:621206/1‑150 (MQ=255)             ccggcgaaggcagcatccagatgaacatccaggagctgtccacctgcatgcaatacggcctgccggtgaagatcgtcaacctgaacaacggcgtgtaggccatgtcctgccactggcggaccatgcccaacaCGCCGTTGTTCAGGTTGa                                                                                                                                    <  1:322201‑M2/18‑1 (MQ=255)              tGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGa                                                                                                                                 >  1:1425506/1‑150 (MQ=255)                      cGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCGGGTTGACGATCTTCAcc                                                                                                                         <  1:1412296/150‑1 (MQ=255)                          tACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCa                                                                                                                     <  1:875431/150‑1 (MQ=255)                             ccACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGc                                                                                                                  >  1:1150574/1‑150 (MQ=255)                             ccACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGc                                                                                                                  >  1:1393931/1‑150 (MQ=255)                             ccACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGc                                                                                                                  <  2:1130255/150‑1 (MQ=255)                             ccACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGAGAAAAAAAAAAAACGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGc                                                                                                                  >  2:49244/1‑150 (MQ=255)                                 aTGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTa                                                                                                              >  2:877352/1‑150 (MQ=255)                                       aTAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTAtt                                                                                                            >  2:292396/1‑146 (MQ=255)                                       aTAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTAtt                                                                                                            <  1:292396/146‑1 (MQ=255)                                           gCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAg                                                                                                    <  2:621206/150‑1 (MQ=255)                                                 gccagcTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGAc                                                                                              <  2:1048971/150‑1 (MQ=255)                                                  ccagcTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGAt                                                                                                                                >  2:1163720/1‑115 (MQ=255)                                                  ccagcTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGAt                                                                                                                                <  1:1163720/115‑1 (MQ=255)                                                   cagcTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAg                                                                                            >  1:1367811/1‑150 (MQ=255)                                                      cTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGAc                                                                                                                                   <  2:1401222/108‑1 (MQ=255)                                                      cTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGAc                                                                                                                                   >  1:1401222/1‑108 (MQ=255)                                                         gATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTc                                                                                                                                           >  1:691024/1‑97 (MQ=255)                                                         gATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTc                                                                                                                                           <  2:691024/97‑1 (MQ=255)                                                         gATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTg                                                                                      <  2:1367811/150‑1 (MQ=255)                                                           tAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTg                                                                                      >  1:1136572/1‑148 (MQ=255)                                                           tAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTg                                                                                      <  2:1136572/148‑1 (MQ=255)                                                            aaaGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGAt                                                                                   <  1:918244/150‑1 (MQ=255)                                                                  aGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCAt                                                                             <  2:1259937/150‑1 (MQ=255)                                                                   ggCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATc                                                                            <  2:1150574/150‑1 (MQ=255)                                                                     cAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTg                                                                          <  2:1425506/150‑1 (MQ=255)                                                                       gCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCa                                                                                                                                          >  2:177340/1‑84 (MQ=255)                                                                       gCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCa                                                                                                                                          <  1:177340/84‑1 (MQ=255)                                                                       gCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGa                                                                        <  1:1388547/150‑1 (MQ=255)                                                                          aCTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGAtgc                                                                     <  2:957496/150‑1 (MQ=255)                                                                            tCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGAtgctg                                                                   >  1:723375/1‑150 (MQ=255)                                                                             cGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGAtgctgc                                                                  <  2:1393931/150‑1 (MQ=255)                                                                                      tcaacctgaacaacggcgTGTTGGGCATGGTCC‑GCCAGTGGCAGGAC‑ATGGCCTACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCgg                                                         <  1:322201‑M1/132‑1 (MQ=255)                                                                                             gtgACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCAc                                                                                                                          <  2:1138330/78‑1 (MQ=255)                                                                                             gtgACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCAc                                                                                                                          >  1:1138330/1‑78 (MQ=255)                                                                                             gtgACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAg                                                                                                    <  2:1084725/100‑1 (MQ=255)                                                                                             gtgACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAg                                                                                                    >  1:1084725/1‑100 (MQ=255)                                                                                                acgacCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGc                                               >  1:827191/1‑150 (MQ=255)                                                                                                  gacagcTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCa                                             <  2:878077‑M1/144‑1 (MQ=255)                                                                                                      gTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGACCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCACGTc                                         <  1:1116215/150‑1 (MQ=255)                                                                                                        TGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCACGTCCt                                       >  2:827191‑M1/1‑150 (MQ=255)                                                                                                               cATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGTCTTCGCCGGTCACACAGACGTCGTCCTGATCCgg                                <  1:49244/150‑1 (MQ=255)                                                                                                                 catggtccgccagtggcaggacatggcctacaCGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTAtt                                                                                                            >  1:556362‑M2/33‑74 (MQ=255)                                                                                                                 catggtccgccagtggcaggacatggcctacaCGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTAtt                                                                                                            <  2:556362‑M2/42‑1 (MQ=255)                                                                                                                      cTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTgg                                                                                     <  2:1189297/91‑1 (MQ=255)                                                                                                                      cTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTgg                                                                                     >  1:1189297/1‑91 (MQ=255)                                                                                                                       cgCCACTGGC‑AGAACATGCCCAACAAGCCGTTGTTCAGGTTGCCGAGCTTCACCGGCAGGCCGTATTGCATGCAGCTGGACAGCTCCAAGCAGCACATCTGGATACTGCCTTGGCCGGGCACACAGCCCACGCCCTGATCCGGGAAGTTg                         >  2:39860/2‑150 (MQ=255)                                                                                                                                           ccAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGt                                                                                 <  2:1073007/75‑1 (MQ=255)                                                                                                                                           ccAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGt                                                                                 >  1:1073007/1‑75 (MQ=255)                                                                                                                                            cAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCACGTCCTGATCCGGGAAGTTGAGCTTGACGCCCATcgccgc     <  1:878077/150‑1 (MQ=255)                                                                                                                                             aaCACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCACGTCCTGATCCGGGAAGTTGAGCTTGACGCCCATCgccgcc    >  2:83254/1‑150 (MQ=255)                                                                                                                                              acaCGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCACGTCCTGATCCGGGAAGTTGAGCTTGACGCCCATCGccgccg   >  2:284215‑M2/4‑150 (MQ=255)                                                                                                                                               caCGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCACGTCCTGATCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCgg  <  2:322201‑M2/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    AGGTCCTTCAGGCTGGTGATGCGGATACCCACATGGCCATAGGCCTCAGCCAGCTTGATAAAGTCAGGCAGCGACTCGACGTACGAGTGCGAGTGACGACCGTTGTAGGCCATG‑TCCTGCCACTGGC‑GGACCATGCCCAACACGCCGTTGTTCAGGTTGACGATCTTCACCGGCAGGCCGTATTGCATGCAGGTGGACAGCTCCTGGATGTTCATCTGGATGCTGCCTTCGCCGGTCACACAGGCCACGTCCTGATCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGG  >  NC_002947/5317845‑5318134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.