New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5655636	59 (1.120)	4 (0.080)	4/234	NT	7.4%	intergenic (‑40/+112)	epd/tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
	?	NC_002947	= 5655732	44 (0.880)					intergenic (‑136/+16)	epd/tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A

GGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGT  >  NC_002947/5655592‑5655881                                                                                                                                             |                                                                                                                                                      ggCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATc                                                                                                                                              <  1:949311/150‑1 (MQ=255)  gCATTCGGGGCTCACGAGACAGTTCAATTGTTGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCt                                                                                                                                             >  1:1245516/1‑150 (MQ=255)    aTTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCCCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCttt                                                                                                                                           <  2:996917/150‑1 (MQ=255)       cGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTaaa                                                                                                                                        <  2:1205162/150‑1 (MQ=255)           gCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTaa                                                                                                                                         >  2:650307/1‑145 (MQ=255)           gCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTaa                                                                                                                                         <  1:650307/145‑1 (MQ=255)                        ttCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGct                                                                                                                       >  1:495879/1‑150 (MQ=255)                           aaTTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCtt                                                                                                                    <  2:495879/150‑1 (MQ=255)                                        cTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGGTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAg                                                                                                       >  2:1280400/1‑150 (MQ=255)                                                    cGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAg                                                                                           <  2:225107/150‑1 (MQ=255)                                                           gCATTCGCGGGCAAGCCCGCTCCCACAGGGGTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCCCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCATTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGCGTGAAg                                                                                    >  1:505105/1‑150 (MQ=255)                                                                     gCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCtt                                                                          >  1:1252133/1‑150 (MQ=255)                                                                      caggCCCGCGCCCACAGGGTTTCATGCAATCTCTGTGTGAGCGGCCTTGTCTGCGAAGGAAGGCGACACCGCCCGCAGATCTTTAAATCATTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTc                                                                         <  2:505105/147‑1 (MQ=255)                                                                         gCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGATACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGaa                                                                      >  2:1099730/1‑150 (MQ=255)                                                                           ccGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACa                                                                    >  1:216924/1‑150 (MQ=255)                                                                               tCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAg                                                                                                       <  2:133565/111‑1 (MQ=255)                                                                               tCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAg                                                                                                       >  1:133565/1‑111 (MQ=255)                                                                               tCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGc                                                                >  1:841907/1‑150 (MQ=255)                                                                                cccACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCccgcaggctgacgacaattgaactgtctcgtgagccccgaatgccccaccgtccctacaaagttgcactcaacggttatggc                                                                     <  1:352223‑M2/144‑83 (MQ=255)                                                                                cccACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCccgcaggctgacgacaattgaactgtctcgtgagccccgaatgccccaccgtccctacaaagttgcactcaacggttatggc                                                                     >  2:352223‑M2/1‑62 (MQ=255)                                                                                 ccACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCccgcaggctgacgacaattgaactgtctcgtgagccccgaatgccccaccgtccctacaaagttgcactcaacggttatggccgtatcg                                                              <  1:1308853‑M2/150‑90 (MQ=255)                                                                                  gcagaggTTGCATGAAACC‑CTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGaa                                                            >  2:973554/6‑150 (MQ=38)                                                                                  cacaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAggg                                                                                         >  2:1280296/1‑122 (MQ=255)                                                                                  cacaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAggg                                                                                         <  1:1280296/122‑1 (MQ=255)                                                                                  cacaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGa                                                             >  1:925271/1‑150 (MQ=255)                                                                                  cacaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGa                                                             >  1:42466/1‑150 (MQ=255)                                                                                   acaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAg                                                                                                       >  2:1029764/1‑107 (MQ=255)                                                                                   acaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAg                                                                                                       <  1:1029764/107‑1 (MQ=255)                                                                                   acaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGc                                                                <  1:349064/146‑1 (MQ=255)                                                                                   acaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGc                                                                >  2:349064/1‑146 (MQ=255)                                                                                           tCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGgcgc                                                    <  2:1419118/150‑1 (MQ=255)                                                                                             aTGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTAcc                                                                                                          >  1:482593/1‑94 (MQ=255)                                                                                             aTGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTAcc                                                                                                          <  2:482593/94‑1 (MQ=255)                                                                                              tGCAACGTCTGTGTTAGCGGTCTTGTCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGa                                                 >  2:19621/1‑150 (MQ=255)                                                                                               gCAACCTCTGTGGGAGCGGGCTTGCCGGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTtc                                                                                                <  1:319485/102‑1 (MQ=255)                                                                                               gCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTtc                                                                                                >  2:319485/1‑102 (MQ=255)                                                                                                     tctGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCg                                          >  2:2803/1‑150 (MQ=255)                                                                                                            gAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAggtgg                                   <  2:1245516/150‑1 (MQ=255)                                                                                                              gCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTc                                 >  1:289875/1‑150 (MQ=255)                                                                                                                  gCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGc                             >  2:51018/1‑150 (MQ=255)                                                                                                                    ttGCCCGCGAATGAAGGCGACACCGCccgcaggctgacgacaattgaactgtctcgtgagccccgaatgccccaccgtccctacaaagttgcactcaacggttatggccgtatcggccgctgtgtcctgcgcgcgctgttcgagcggggg                           >  2:1308853‑M2/1‑26 (MQ=255)                                                                                                                     tGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGccca                          <  2:289875/150‑3 (MQ=255)                                                                                                                       cccGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCGAGGGTGAAGCCCAACCCTTCGAACCATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCgatg                        >  2:506305/1‑150 (MQ=255)                                                                                                                          gcgAATGAAGGCGACACCGCCCGCAGATTTGTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATa                     >  1:1327720/1‑150 (MQ=255)                                                                                                                           cgAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATAc                    <  1:19621/150‑1 (MQ=255)                                                                                                                                     cGATACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAg          <  1:1099730/150‑1 (MQ=255)                                                                                                                                      gACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATg                                                                                                   >  2:597613/1‑60 (MQ=255)                                                                                                                                      gACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATg                                                                                                   <  1:597613/60‑1 (MQ=255)                                                                                                                                      gACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAgg         <  2:42466/150‑1 (MQ=255)                                                                                                                                       acacCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGc        <  1:2803/150‑1 (MQ=255)                                                                                                                                            gcccgcAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAggtg                                    <  1:1318610/117‑1 (MQ=255)                                                                                                                                            gcccgcAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAggtg                                    >  2:1318610/1‑117 (MQ=255)                                                                                                                                             cccgcAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGt  >  2:230479/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                                      GGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGT  >  NC_002947/5655592‑5655881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.