| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5759460 = | 52 (0.990) | 12 (0.310) | 8/182 | NT | 30.6% | intergenic (+13/+143) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | 5759552 = | 16 (0.410) | intergenic (+105/+51) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
GGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCGG > NC_002947/5759405‑5759698 | ggTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGcc > 1:930843/1‑150 (MQ=255)ggTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGcc < 2:930843/150‑1 (MQ=255) tgtATGAGGCGTGGCGGGAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCgg < 1:1362924/150‑1 (MQ=255) gAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCga > 2:954158/1‑150 (MQ=255) gggAGTTGAGGTGTTGCCTGTGCGGGCCTCTCCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCCATCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt < 2:314371/150‑1 (MQ=39) gggAGCGGATGTGTTGCCTGTGCGGGCCTCGTCGCGGGTAAACCCGTTCGTACGCAGGCGGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTGACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt < 2:553659/150‑1 (MQ=39) ttGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCa < 1:314358/147‑1 (MQ=255) ttGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCa > 2:314358/1‑147 (MQ=255) CTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAACGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTa < 1:155519‑M1/150‑1 (MQ=255) CTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTa < 1:373064‑M1/150‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAAcc < 2:1172414‑M1/126‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAAcc > 1:1172414‑M1/1‑126 (MQ=255) aGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACaaaaaa < 2:889380‑M1/95‑1 (MQ=255) aGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACaaaaaa > 1:889380‑M1/2‑96 (MQ=255) acccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCttt < 1:425677‑M2/34‑1 (MQ=255) acccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCttt > 2:425677‑M2/73‑106 (MQ=255) acccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCttt > 2:425786‑M2/73‑106 (MQ=255) acccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCttt < 1:425786‑M2/34‑1 (MQ=255) cccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGGGTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCt > 1:1021530‑M2/72‑150 (MQ=255) cccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCgg > 1:1197889‑M2/72‑116 (MQ=255) cccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCgg < 2:1197889‑M2/45‑1 (MQ=255) ccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAg > 1:127744‑M2/71‑118 (MQ=255) ccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAg < 2:127744‑M2/48‑1 (MQ=255) ccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcACCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCtt > 1:394689‑M2/71‑150 (MQ=255) tcctacaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTg > 1:517952‑M2/67‑150 (MQ=255) TACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCAt < 2:1422334‑M1/150‑1 (MQ=255) ccGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCa < 1:954158/150‑1 (MQ=255) ccGAGGGAACGGCGCAATCCCCTGTAAGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGAAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCa > 1:463324/1‑150 (MQ=255) gAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCAtt > 2:1074910/1‑150 (MQ=255) gggAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGcaca > 2:996335/1‑112 (MQ=255) gggAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGcaca < 1:996335/112‑1 (MQ=255) gccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCt < 2:517952‑M2/100‑1 (MQ=255) aaCGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTg > 2:997560/1‑150 (MQ=255) aCGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgc > 2:209345/1‑150 (MQ=255) aCGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTGgc < 1:1422334/150‑1 (MQ=255) ggCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTa < 2:444161/109‑1 (MQ=255) ggCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTa > 1:444161/1‑109 (MQ=255) ggCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgcgc < 1:997560/150‑1 (MQ=255) ccccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAggg < 1:1074910/150‑1 (MQ=255) cccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGc > 1:217833/1‑150 (MQ=255) ccTGTAGGAGCGGGTTTACCCGCGCAGAGGCCCGCACCCGCAACAAAAAAGCGCCCCGGGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCg > 1:929855/1‑150 (MQ=255) ccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCAcc > 1:589814/1‑110 (MQ=255) ccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCAcc < 2:589814/110‑1 (MQ=255) aggagcgggtttacccgcgaagaggcccgcACCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGaa < 2:394689‑M2/120‑1 (MQ=255) gagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGt < 2:373064‑M2/122‑1 (MQ=255) acccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGa < 1:209345‑M2/132‑1 (MQ=255) ccgcgaagaggcccgcGCCGGCAACAAACACGGCCGCCGAGAGGCGCTTTTGCTGAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACa > 1:536486‑M2/17‑150 (MQ=255) ccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAg < 1:952094‑M2/62‑1 (MQ=255) ccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAg > 2:952094‑M2/17‑78 (MQ=255) ccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTTCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACa > 1:1363395‑M2/17‑150 (MQ=255) ccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACa > 2:1350806‑M2/17‑150 (MQ=255) ccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGc < 2:1062774‑M2/91‑1 (MQ=255) ccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGc > 1:1062774‑M2/5‑95 (MQ=255) ccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCg > 2:208685‑M2/5‑150 (MQ=255) cgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCgg < 1:1350806‑M2/147‑1 (MQ=255) | GGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCGG > NC_002947/5759405‑5759698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |