New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5760421	45 (0.860)	3 (0.060)	3/234	NT	7.0%	coding (377/414 nt)	PP_5055	Sulfurtransferase
	?	NC_002947	= 5760453	37 (0.740)					coding (345/414 nt)	PP_5055	Sulfurtransferase

CGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTGTCCTGCGGGATGTTCACCGCGCCGACGATATGAC  >  NC_002947/5760304‑5760601                                                                                                                                                      |                                                                                                                                                      cGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTaa                                                                                                                                                       >  2:243260/1‑150 (MQ=255)    ccTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAAcca                                                                                                                                                    <  2:540756‑M2/150‑4 (MQ=255)          tctcGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTg                                                                                                                                              >  2:892745/1‑150 (MQ=255)            tcGAGCATGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGag                                                                                                                                            >  2:355864/1‑150 (MQ=255)            tcGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGag                                                                                                                                            >  2:1300316/1‑150 (MQ=255)                gCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGagcagc                                                                                                                                        <  2:505914/150‑1 (MQ=255)                    gTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTcgc                                                                                                                                    <  1:892745/150‑1 (MQ=255)                    gTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCACCTcgc                                                                                                                                    >  2:84387/1‑150 (MQ=255)                           gcgcgcATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATTACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAAt                                                                                                                             <  1:943188/150‑1 (MQ=255)                              cgcATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGt                                                                                                                          <  1:243260/150‑1 (MQ=255)                                cATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGc                                                                                                                        <  2:157557/150‑1 (MQ=255)                                       tAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGActg                                                                                                                 >  1:106711/1‑150 (MQ=255)                                        aGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGActgc                                                                                                                <  2:1219868/150‑1 (MQ=255)                                           ggCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATCGTGCTGGACTGCTgg                                                                                                             <  2:59671/150‑1 (MQ=255)                                            gCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCCCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGc                                                                                                            >  1:459674/1‑150 (MQ=255)                                               gtagtCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCa                                                                                                         <  2:1210269/150‑1 (MQ=255)                                                tagtCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCAt                                                                                                        <  2:106711/150‑1 (MQ=255)                                                 agtCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATc                                                                                                       <  1:355864/150‑1 (MQ=255)                                                        ggAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCttt                                                                                                                                               >  1:978073/1‑103 (MQ=255)                                                        ggAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCttg                                                                                                                                               <  2:978073/103‑2 (MQ=255)                                                                  aTGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCaa                                                                                      <  1:1138446/150‑1 (MQ=255)                                                                      cAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTAAGATGAAAAAAAAAAATTGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGtc                                                                                  >  2:1106703/1‑150 (MQ=255)                                                                                 tCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGGCACCGCTCAGTTTGGCGGCGTTGTaa                                                                                                                                                       >  2:1032318/1‑70 (MQ=255)                                                                                 tCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTaa                                                                                                                                                       <  1:1032318/70‑1 (MQ=255)                                                                                  cACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGc                                                                     >  1:1167307/1‑150 (MQ=255)                                                                                   aCTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCt                                                                    >  2:784338/1‑150 (MQ=255)                                                                                     ttCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTg                                                                  >  1:759635/1‑150 (MQ=255)                                                                                         ccAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTa                                                                        <  1:1274876/140‑1 (MQ=255)                                                                                         ccAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTa                                                                        >  2:1274876/1‑140 (MQ=255)                                                                                             gggCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTc                                                          >  1:376662/1‑150 (MQ=255)                                                                                              ggCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCg                                                         <  1:540756/150‑1 (MQ=255)                                                                                               gCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATC‑CGATCTCTTTCTTTATGCTTGCCCAGCTCgg                                                        <  1:1106703/150‑1 (MQ=255)                                                                                                         ggCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTATGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGtt                                              >  2:1416014/1‑150 (MQ=255)                                                                                                          acTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCACCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTTT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTg                                             <  2:294011/149‑1 (MQ=255)                                                                                                           cTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAAccagctggaaagccgataacctgcccctggtgaagtgatatgaagcctgtcatcgtctactccagcgactactgcccctactgcatgcgc                                                             >  2:852922‑M2/1‑44 (MQ=255)                                                                                                           cTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAAccagctggaaagccgataacctgcccctggtgaagtgatatgaagcctgtcatcgtctactccagcgactactgcccctactgcatgcgc                                                             <  1:852922‑M2/134‑91 (MQ=255)                                                                                                           cTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTgg                                            <  2:759635/150‑1 (MQ=255)                                                                                                            tttCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGc                                           >  1:1317839/1‑150 (MQ=255)                                                                                                                 aGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAAccagctggaaagccgataacctgcccctggtgaagtgatatgaagcctgtcatcgtctactccagcgactactgcccctactgcatgcgcgccaagtacctgctcgagagca                                       <  2:988768‑M2/150‑113 (MQ=255)                                                                                                                 aGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCt                                      >  1:376366/1‑150 (MQ=255)                                                                                                                   cTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTg                                    <  1:1300316/150‑1 (MQ=255)                                                                                                                     gggaaCGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATAGTGCCGGACTGCTGGACCATCGCGGCGACGACGTTCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTCGCCAGCTTGTc                                  <  2:483667/147‑1 (MQ=255)                                                                                                                            ccACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTGTCCTGCggg                           <  2:1317839/150‑1 (MQ=255)                                                                                                                               ccGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTGTCCTGCGGGATg                        >  1:54471/1‑150 (MQ=255)                                                                                                                                    cAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTGTCCTGCGGGATGTTCAc                   <  1:660179/150‑1 (MQ=255)                                                                                                                                      gTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCAGGCCTGTTGGCCCATCGCGTAGACGACGATTAAGCTCT‑ATTCTTAATGCTTCCCCATCTCGGTCACGCGGTTGGCCATCTTGTCCTGCGGGATGTTCACcg                 <  2:872909/150‑1 (MQ=255)                                                                                                                                         tGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑GTTCTTTATGCTTGCCCAGCGCGGGCCTGCGGTTGGCCAGCTTGTCCTGCGGGATGTTCACCgcgc              <  2:459674/150‑1 (MQ=255)                                                                                                                                           gcggcgTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTGTCCTGCGGGATGTTCACCGCGCcg            >  1:1161238/1‑150 (MQ=255)                                                                                                                                             ggcgTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGTTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTGTCCTGCGGGATGTTCACCGCGCcgac          >  1:683089/1‑150 (MQ=255)                                                                                                                                                     aaCCAGCTTTGCGCGGCTGGGGTCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTGTCCTGCGGGATGTTCACCGCGCCGACGATATGAc  >  2:1059363/1‑150 (MQ=255)                                                                                                                                                     aaCCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGtct                                                                                 >  2:75926/1‑72 (MQ=255)                                                                                                                                                     aaCCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGtct                                                                                 <  1:75926/72‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCT‑TTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGCCAGCTTGTCCTGCGGGATGTTCACCGCGCCGACGATATGAC  >  NC_002947/5760304‑5760601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.